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LOCUS EU177881 1285 bp RNA linear VRL 30-SEP-2008
DEFINITION HIV-1 isolate GH_004 from Ghana pol protein (pol) gene, partial cds
ACCESSION EU177881
VERSION EU177881.1 GI:163963643
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1285)
Show all sequences for reference 1
AUTHORS Delgado,E., Ampofo,W.K., Sierra,M., Torpey,K., Perez-Alvarez,L.,
Bonney,E.Y., Mukadi,Y.D., Lartey,M., Nyarko,C., Amenyah,R.N.,
Thomson,M. and Najera,R.
TITLE High prevalence of unique recombinant forms of HIV-1 in Ghana:
molecular epidemiology from an antiretroviral resistance study.
JOURNAL J. Acquir. Immune Defic. Syndr.. 48(5); 599-606 (2008)
PUBMED 18645511
REFERENCE 2 (bases 1 to 1285)
Show all sequences for reference 2
AUTHORS Delgado,E., Ampofo,W., Sierra,M., Perez-Alvarez,L., Bonney,E.,
Thomson,M.M. and Najera,R.
TITLE Direct Submission
JOURNAL Submitted (26-SEP-2007) Patogenia Viral, Instituto de Salud Carlos
III, Ctra. Majadahonda a Pozuelo Km 2, Majadahonda, Madrid 28220,
Spain
FEATURES Location/Qualifiers
source 1..1285
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="GH_004"
/isolation_source="plasma"
/db_xref="taxon:11676"
/country="Ghana"
/note="subtype: CRF02_AG; acronym: HIV-1"
gene <1..>1285
/gene="pol"
CDS <1..>1285
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="ABY50746.1"
/db_xref="GI:163963644"
/translation="PQITLWQRPLVTVRIGEQLIEALLDTGADDTVLEEIDLPGKWKP
KMIGGIGGFIKVRQYDQILIEICGKRAIGTVLVGPTPVNIIGRNMLTQIGCTLNFPIS
PIETVAVKLKPGMDGPKVKQWPLTEEKIKALTEICTEMEKEGKISRIGPENPYNTPIF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDKDFRKYTAFTIPSVNNETPGIRYQYNVLPQGWKGSPAIFQASMTKILEPFRTRNPE
VVIYQYMDDLYVGSDLEIGQHRAKIEQLREHLLRWGFTTPDKKHQKEPPFLWMGYELH
PDKWTVQPIQLPDKDSWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGAKALTDVV
TLTEEAELELAENREILKEPVHGVYYDPTKDLIAEI"
BASE COUNT 509 a 207 c 275 g 292 t 2 other
ORIGIN
1 cctcaaatca ctctttggca gcgaccctta gtcacagtaa gaatagggga acagctaata
61 gaagccctat tagatacagg agcagatgat acagtattag aagaaataga tttaccagga
121 aaatggaagc caaaaatgat agggggaatt ggrggattta tcaaagtaag acaatatgat
181 cagatactta tagaaatttg tggaaaaagg gccataggta cagtattagt aggacctaca
241 cctgtcaaca taattggacg aaatatgttg actcagattg gttgtactyt aaatttccca
301 attagtccta ttgaaaccgt ggcagtaaaa ttaaagccag gaatggatgg tccaaaggtt
361 aaacaatggc cattgacaga agaaaaaata aaagcattaa cagaaatttg tacagagatg
421 gaaaaggaag gaaaaatttc aagaataggg cctgaaaatc catacaatac tccaatattt
481 gccataaaga aaaaagatag tactaaatgg agaaaattag tagatttcag agagctcaat
541 aagagaactc aagacttctg ggaggtccaa ttaggaatac ctcatcccgc aggattaaaa
601 aagaaaaaat cagtaacagt actagatgtg ggggatgcat atttttcagt tcccttagat
661 aaagacttta gaaagtatac tgcatttact atacctagtg taaataatga aacaccaggg
721 attagatatc agtacaatgt gcttccacag ggatggaaag gatcgccagc aatatttcaa
781 gcaagcatga caaaaatctt agagcccttt agaacaagaa atccagaggt ggtgatctac
841 caatatatgg atgatttata tgtaggatca gacttagaga tagggcaaca tagagcaaaa
901 atagagcagt tgagagagca tttactgaga tggggattta ccacaccaga caaaaaacat
961 cagaaagaac ccccattcct ttggatggga tatgaactcc atcctgacaa atggacagtc
1021 cagcctatac agctgccaga caaagacagc tggactgtca atgatataca gaagttagtg
1081 ggaaaactaa attgggcaag tcaaatttat gcaggaatta aagtaaaaca actgtgtaaa
1141 ctcctcaggg gagccaaagc actaacagat gtagtaacac tgactgagga agcagaatta
1201 gaattggcag agaacaggga aattctaaaa gaacctgtac atggagtata ttatgaccca
1261 acaaaagact tgatagcaga aatac
//
last modified: Tue May 31 10:56 2022