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LOCUS	    EU177881		    1285 bp    RNA     linear	VRL 30-SEP-2008
DEFINITION  HIV-1 isolate GH_004 from Ghana pol protein (pol) gene, partial cds
ACCESSION   EU177881
VERSION     EU177881.1 GI:163963643
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1285)
            Show all sequences for reference 1
  AUTHORS   Delgado,E., Ampofo,W.K., Sierra,M., Torpey,K., Perez-Alvarez,L.,
	    Bonney,E.Y., Mukadi,Y.D., Lartey,M., Nyarko,C., Amenyah,R.N.,
	    Thomson,M. and Najera,R.
  TITLE     High prevalence of unique recombinant forms of HIV-1 in Ghana:
	    molecular epidemiology from an antiretroviral resistance study.
  JOURNAL   J. Acquir. Immune Defic. Syndr.. 48(5); 599-606 (2008)
  PUBMED    18645511
REFERENCE   2 (bases 1 to 1285)
            Show all sequences for reference 2
  AUTHORS   Delgado,E., Ampofo,W., Sierra,M., Perez-Alvarez,L., Bonney,E.,
	    Thomson,M.M. and Najera,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-SEP-2007) Patogenia Viral, Instituto de Salud Carlos
	    III, Ctra. Majadahonda a Pozuelo Km 2, Majadahonda, Madrid 28220,
	    Spain
FEATURES             Location/Qualifiers
     source	     1..1285
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="GH_004"
		     /isolation_source="plasma"
		     /db_xref="taxon:11676"
		     /country="Ghana"
		     /note="subtype: CRF02_AG; acronym: HIV-1"
     gene	     <1..>1285
		     /gene="pol"
     CDS	     <1..>1285
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ABY50746.1"
		     /db_xref="GI:163963644"
		     /translation="PQITLWQRPLVTVRIGEQLIEALLDTGADDTVLEEIDLPGKWKP
		     KMIGGIGGFIKVRQYDQILIEICGKRAIGTVLVGPTPVNIIGRNMLTQIGCTLNFPIS
		     PIETVAVKLKPGMDGPKVKQWPLTEEKIKALTEICTEMEKEGKISRIGPENPYNTPIF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LDKDFRKYTAFTIPSVNNETPGIRYQYNVLPQGWKGSPAIFQASMTKILEPFRTRNPE
		     VVIYQYMDDLYVGSDLEIGQHRAKIEQLREHLLRWGFTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQPIQLPDKDSWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGAKALTDVV
		     TLTEEAELELAENREILKEPVHGVYYDPTKDLIAEI"
BASE COUNT	509 a	 207 c	  275 g    292 t      2 other
ORIGIN
       1 cctcaaatca ctctttggca gcgaccctta gtcacagtaa gaatagggga acagctaata 
      61 gaagccctat tagatacagg agcagatgat acagtattag aagaaataga tttaccagga 
     121 aaatggaagc caaaaatgat agggggaatt ggrggattta tcaaagtaag acaatatgat 
     181 cagatactta tagaaatttg tggaaaaagg gccataggta cagtattagt aggacctaca 
     241 cctgtcaaca taattggacg aaatatgttg actcagattg gttgtactyt aaatttccca 
     301 attagtccta ttgaaaccgt ggcagtaaaa ttaaagccag gaatggatgg tccaaaggtt 
     361 aaacaatggc cattgacaga agaaaaaata aaagcattaa cagaaatttg tacagagatg 
     421 gaaaaggaag gaaaaatttc aagaataggg cctgaaaatc catacaatac tccaatattt 
     481 gccataaaga aaaaagatag tactaaatgg agaaaattag tagatttcag agagctcaat 
     541 aagagaactc aagacttctg ggaggtccaa ttaggaatac ctcatcccgc aggattaaaa 
     601 aagaaaaaat cagtaacagt actagatgtg ggggatgcat atttttcagt tcccttagat 
     661 aaagacttta gaaagtatac tgcatttact atacctagtg taaataatga aacaccaggg 
     721 attagatatc agtacaatgt gcttccacag ggatggaaag gatcgccagc aatatttcaa 
     781 gcaagcatga caaaaatctt agagcccttt agaacaagaa atccagaggt ggtgatctac 
     841 caatatatgg atgatttata tgtaggatca gacttagaga tagggcaaca tagagcaaaa 
     901 atagagcagt tgagagagca tttactgaga tggggattta ccacaccaga caaaaaacat 
     961 cagaaagaac ccccattcct ttggatggga tatgaactcc atcctgacaa atggacagtc 
    1021 cagcctatac agctgccaga caaagacagc tggactgtca atgatataca gaagttagtg 
    1081 ggaaaactaa attgggcaag tcaaatttat gcaggaatta aagtaaaaca actgtgtaaa 
    1141 ctcctcaggg gagccaaagc actaacagat gtagtaacac tgactgagga agcagaatta 
    1201 gaattggcag agaacaggga aattctaaaa gaacctgtac atggagtata ttatgaccca 
    1261 acaaaagact tgatagcaga aatac
//
last modified: Tue May 31 10:56 2022


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