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LOCUS EU166440 2559 bp DNA linear VRL 13-FEB-2008
DEFINITION HIV-1 isolate ZM206F_SGA_A10 from Zambia envelope glycoprotein
(env) gene, complete cds; and vpu protein (vpu), rev protein (rev),
and tat protein (tat) genes, partial cds
ACCESSION EU166440
VERSION EU166440.1 GI:159160510
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2559)
Show all sequences for reference 1
AUTHORS Salazar-Gonzalez,J.F., Bailes,E., Pham,K.T., Salazar,M.G.,
Guffey,M.B., Keele,B.F., Derdeyn,C.A., Farmer,P., Hunter,E.,
Allen,S., Manigart,O., Mulenga,J., Anderson,J.A., Swanstrom,R.,
Haynes,B.F., Athreya,G.S., Korber,B.T.M., Sharp,P.M., Shaw,G.M. and
Hahn,B.H.
TITLE Deciphering human immunodeficiency virus type 1 transmission and
early envelope diversification by single-genome amplification and
sequencing.
JOURNAL J. Virol.. 82(8); 3952-70 (2008)
PUBMED 18256145
REFERENCE 2 (bases 1 to 2559)
Show all sequences for reference 2
AUTHORS Salazar-Gonzalez,J.F.
TITLE Direct Submission
JOURNAL Submitted (19-SEP-2007) University of Alabama at Birmingham,
Department of Medicine, Kaul 806, 720 20th Street South,
Birmingham, AL 35294, USA
REFERENCE 3
Show all sequences for reference 3
AUTHORS Kraft,C.S., Basu,D., Hawkins,P.A., Hraber,P.T., Chomba,E.,
Mulenga,J., Kilembe,W., Khu,N.H., Derdeyn,C.A., Allen,S.A.,
Manigart,O. and Hunter,E.
TITLE Timing and source of subtype-C HIV-1 superinfection in the newly
infected partner of Zambian couples with disparate viruses.
JOURNAL Retrovirology.. 9(1); 22 (2012)
PUBMED 22433432
COMMENT Annotation information was provided by the author. Some of
theinformation does not have GenBank feature identifiers and is
beingprovided in the comment section. Information in this section
issearchable in HIV Database at Los Alamos
(www.hiv.lanl.gov).##HIVDataBaseData-START##Sequence Name
ZM206F_SGA_A10Patient code ZM206FPatient sex FSubtype CSample date
Jul 13 2002Sample tissue plasmaCulture method
unculturedAmplification strategy SGA (Single Genome
Amplification)Patient health status earlyDBID
1623319314##HIVDataBaseData-END##
FEATURES Location/Qualifiers
source 1..2559
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="ZM206F_SGA_A10"
/db_xref="taxon:11676"
/country="Zambia"
/note="subtype: C"
gene 1..2559
/gene="env"
CDS 1..2559
/gene="env"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="ABW95363.1"
/db_xref="GI:159160514"
/translation="MRVMGTRRNWQQWWIWGILGFWVLMMCNARNAKKLWVTVYYGVP
VWKEAKTTLFCASDAKAYSKEVHNIWATHACVPTDPNPQEMKLENVTENFNMWKNDMV
DQMHEDIISLWDQSLKPCVELTPLCVTLNCTNYNGSSRANDNNVNITSDNGEYGVKNC
SFNITTELRDKKKQEYALFYRSDIIPLNNTSDENGGYRLINCNTSAITQACPKVSFDP
IPIHYCAPAGYAILKCNNKTFNGTGSCNNVSTVQCTHGIKPVVSTQLLLNGSLAEEDI
IIRSENLTDNVKTIIVHLNKSVEINCTRPNNNTRKSVRIGPGQTFYATGEIIGNIRQA
HCNIRGEEWNKALEEVRKKLKQHFHKNITFAPSSGGDPEITTHSFNCRGEFFYCNTSK
LFNNTTSNETITLPCKIKQFINMWQGVGRAMYAPPIAGSITCNSSITGILLTRDGGNN
SSGTETFRPGGGDMRDNWRSELYKYKVVEIKPLGIAPTDAKRRVVEREKRAVGLGAVF
LGFLGAAGSTMGAASIALTVQARQLLSGIVQQQSNLLRAIEAQQHMLQLTVWGIKQLQ
ARVLAIERYLEDQQLLGIWGCSGKLICTTDVPWNVSWSNRTQEDIWSNMTWMEWEKEI
SNYTNTIYWLLEESQIQQERNEKDLLALDSWNNLWNWFGITKWLWYIKIFIMIVGGLI
GLRIIFAVLSIVNRVRQGYSPLSFQTLTPHPRGPDRLGRIEEEGGEQDRNRSIRLVSG
FLSLAWDDLRSLCLFSYHHLRDFILIVVRAVELLGRSNLRGLQRGWEILKYLGSLVQY
WGLELKKSAISLYNTIAITVAEGTDRIIELVQGIGNAIRNIPRRIRQGFEAALQ"
gene <1..83
/gene="vpu"
CDS <1..83
/gene="vpu"
/codon_start="3"
/transl_table="1"
/product="vpu protein"
/protein_id="ABW95362.1"
/db_xref="GI:159160513"
/translation="ESDGDTEELATMVDMGHLRLLGANDV"
gene <2122..2369
/gene="rev"
CDS <2122..2369
/gene="rev"
/codon_start="3"
/transl_table="1"
/product="rev protein"
/protein_id="ABW95361.1"
/db_xref="GI:159160512"
/translation="PYPTPEGTRQARKNRRRRWRARQKQIHSISERILVTCLGRPTEP
VPLQLPPLERLHINCSESSGASGTQQSQGPTEGVGNP"
gene <2122..2212
/gene="tat"
CDS <2122..2212
/gene="tat"
/codon_start="2"
/transl_table="1"
/product="tat protein"
/protein_id="ABW95360.1"
/db_xref="GI:159160511"
/translation="PLPHTRGDPTGSEESKKKVESKTETDPFD"
BASE COUNT 917 a 427 c 596 g 619 t
ORIGIN
1 atgagagtga tggggacacg gaggaattgg caacaatggt ggatatgggg catcttaggc
61 ttttgggtgc taatgatgtg taatgcaaga aatgcaaaga aattgtgggt cacagtctac
121 tatggggtac ctgtgtggaa agaagcaaaa actactctat tttgtgcatc agacgctaaa
181 gcatatagca aagaggtgca taatatctgg gctacacatg cttgtgtacc cactgacccc
241 aatccacaag aaatgaagtt ggaaaatgta acagaaaatt ttaacatgtg gaaaaatgac
301 atggtggacc agatgcatga ggatataatc agtttatggg atcaaagcct caaaccatgt
361 gtagagttga ccccactctg tgtcacttta aactgtacta actacaatgg tagtagcagg
421 gcaaatgata ataatgtaaa tattacctcc gataatggag aatatggagt aaaaaattgc
481 tctttcaata taaccacaga attaagagat aagaaaaagc aagaatatgc acttttttat
541 agatctgata taataccact taacaacaca tctgatgaaa atggtggata tagattaata
601 aattgtaata cctcagccat aacacaagct tgtccaaagg tctcttttga cccaattcct
661 atacattatt gtgctccagc tggttatgcg attctaaagt gtaataataa gacatttaat
721 ggaacaggat catgcaataa tgtcagcaca gtacaatgta cacatgggat taagccagtg
781 gtatcaactc aactactgtt aaatggtagc ctagcagaag aagacataat aattagatct
841 gaaaatctga cagacaatgt caaaacaata atagtacatc ttaataaatc tgtagagatt
901 aattgtacaa gacccaataa taatacaagg aaaagtgtga ggataggacc aggacaaaca
961 ttctatgcaa caggagaaat aataggaaac attagacaag cacattgcaa cattagggga
1021 gaagaatgga ataaagcttt agaagaggta agaaaaaaat taaaacaaca cttccataaa
1081 aacataacct ttgcaccatc ctcaggaggg gacccagaaa ttacaacaca tagctttaat
1141 tgtagaggag aatttttcta ttgtaataca tcaaaactgt ttaataatac tacatctaat
1201 gaaaccatca cactcccatg caaaataaaa caatttataa acatgtggca gggagtagga
1261 cgggcaatgt atgcccctcc cattgcaggg agcataacat gtaactcaag tatcacagga
1321 atactattga cacgtgatgg aggcaacaac agcagtggga cagagacatt cagacctgga
1381 ggaggagata tgagggacaa ttggagaagt gaactatata aatataaagt ggtagaaatt
1441 aagccattag gaatagcacc cactgatgca aaaaggagag tggtggagag agaaaaaaga
1501 gcagtgggac taggagctgt gttccttggg ttcttgggag cagcagggag cactatgggc
1561 gcggcgtcaa tagcgctgac ggtacaggcc agacaattat tgtctggtat agtgcaacag
1621 caaagcaatt tgctgagagc catagaggcg caacagcata tgttgcaact cacggtctgg
1681 ggcattaaac agctccaggc aagagtcctg gctatagaaa gatacctaga ggatcaacag
1741 ctcctaggga tttggggatg ctctggaaaa ctcatctgca ccactgatgt gccttggaat
1801 gttagttgga gtaatagaac tcaagaggat atttggagta acatgacctg gatggagtgg
1861 gaaaaagaaa ttagtaatta cacaaacaca atatactggt tacttgaaga atcgcaaata
1921 cagcaggaaa gaaatgaaaa agatttacta gcattggata gttggaataa tctgtggaat
1981 tggtttggta taacaaaatg gctgtggtat ataaaaatat tcataatgat agtaggaggc
2041 ttgatagggt taagaataat ttttgctgtg ctctctatag tgaatagagt taggcaggga
2101 tactcacctt tgtcatttca gacccttacc ccacacccga ggggacccga caggctcgga
2161 agaatcgaag aagaaggtgg agagcaagac agaaacagat ccattcgatt agtgagcgga
2221 ttcttgtcac ttgcctggga cgacctacgg agcctgtgcc tcttcagcta ccaccacttg
2281 agagacttca tattaattgt agtgagagca gtggagcttc tgggacgcag caatctcagg
2341 ggcctacaga gggggtggga aatccttaag tatctaggaa gtcttgtgca atattggggt
2401 ctagagctaa aaaagagtgc tattagtctg tataatacca tagcaataac agtagctgaa
2461 ggaacagata ggattataga attagtacaa ggaattggta acgctatccg caacatacct
2521 agaaggataa gacagggttt tgaagcagct ttgcaataa
//
last modified: Tue May 31 10:56 2022