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LOCUS	    EU166440		    2559 bp    DNA     linear	VRL 13-FEB-2008
DEFINITION  HIV-1 isolate ZM206F_SGA_A10 from Zambia envelope glycoprotein
	    (env) gene, complete cds; and vpu protein (vpu), rev protein (rev),
	    and tat protein (tat) genes, partial cds
ACCESSION   EU166440
VERSION     EU166440.1 GI:159160510
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2559)
            Show all sequences for reference 1
  AUTHORS   Salazar-Gonzalez,J.F., Bailes,E., Pham,K.T., Salazar,M.G.,
	    Guffey,M.B., Keele,B.F., Derdeyn,C.A., Farmer,P., Hunter,E.,
	    Allen,S., Manigart,O., Mulenga,J., Anderson,J.A., Swanstrom,R.,
	    Haynes,B.F., Athreya,G.S., Korber,B.T.M., Sharp,P.M., Shaw,G.M. and
	    Hahn,B.H.
  TITLE     Deciphering human immunodeficiency virus type 1 transmission and
	    early envelope diversification by single-genome amplification and
	    sequencing.
  JOURNAL   J. Virol.. 82(8); 3952-70 (2008)
  PUBMED    18256145
REFERENCE   2 (bases 1 to 2559)
            Show all sequences for reference 2
  AUTHORS   Salazar-Gonzalez,J.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-SEP-2007) University of Alabama at Birmingham,
	    Department of Medicine, Kaul 806, 720 20th Street South,
	    Birmingham, AL 35294, USA
REFERENCE   3
            Show all sequences for reference 3
  AUTHORS   Kraft,C.S., Basu,D., Hawkins,P.A., Hraber,P.T., Chomba,E.,
	    Mulenga,J., Kilembe,W., Khu,N.H., Derdeyn,C.A., Allen,S.A.,
	    Manigart,O. and Hunter,E.
  TITLE     Timing and source of subtype-C HIV-1 superinfection in the newly
	    infected partner of Zambian couples with disparate viruses.
  JOURNAL   Retrovirology.. 9(1); 22 (2012)
  PUBMED    22433432
COMMENT     Annotation information was provided by the author. Some of
	    theinformation does not have GenBank feature identifiers and is
	    beingprovided in the comment section. Information in this section
	    issearchable in HIV Database at Los Alamos
	    (www.hiv.lanl.gov).##HIVDataBaseData-START##Sequence Name
	    ZM206F_SGA_A10Patient code ZM206FPatient sex FSubtype CSample date
	    Jul 13 2002Sample tissue plasmaCulture method
	    unculturedAmplification strategy SGA (Single Genome
	    Amplification)Patient health status earlyDBID
	    1623319314##HIVDataBaseData-END##
FEATURES             Location/Qualifiers
     source	     1..2559
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="ZM206F_SGA_A10"
		     /db_xref="taxon:11676"
		     /country="Zambia"
		     /note="subtype: C"
     gene	     1..2559
		     /gene="env"
     CDS	     1..2559
		     /gene="env"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="ABW95363.1"
		     /db_xref="GI:159160514"
		     /translation="MRVMGTRRNWQQWWIWGILGFWVLMMCNARNAKKLWVTVYYGVP
		     VWKEAKTTLFCASDAKAYSKEVHNIWATHACVPTDPNPQEMKLENVTENFNMWKNDMV
		     DQMHEDIISLWDQSLKPCVELTPLCVTLNCTNYNGSSRANDNNVNITSDNGEYGVKNC
		     SFNITTELRDKKKQEYALFYRSDIIPLNNTSDENGGYRLINCNTSAITQACPKVSFDP
		     IPIHYCAPAGYAILKCNNKTFNGTGSCNNVSTVQCTHGIKPVVSTQLLLNGSLAEEDI
		     IIRSENLTDNVKTIIVHLNKSVEINCTRPNNNTRKSVRIGPGQTFYATGEIIGNIRQA
		     HCNIRGEEWNKALEEVRKKLKQHFHKNITFAPSSGGDPEITTHSFNCRGEFFYCNTSK
		     LFNNTTSNETITLPCKIKQFINMWQGVGRAMYAPPIAGSITCNSSITGILLTRDGGNN
		     SSGTETFRPGGGDMRDNWRSELYKYKVVEIKPLGIAPTDAKRRVVEREKRAVGLGAVF
		     LGFLGAAGSTMGAASIALTVQARQLLSGIVQQQSNLLRAIEAQQHMLQLTVWGIKQLQ
		     ARVLAIERYLEDQQLLGIWGCSGKLICTTDVPWNVSWSNRTQEDIWSNMTWMEWEKEI
		     SNYTNTIYWLLEESQIQQERNEKDLLALDSWNNLWNWFGITKWLWYIKIFIMIVGGLI
		     GLRIIFAVLSIVNRVRQGYSPLSFQTLTPHPRGPDRLGRIEEEGGEQDRNRSIRLVSG
		     FLSLAWDDLRSLCLFSYHHLRDFILIVVRAVELLGRSNLRGLQRGWEILKYLGSLVQY
		     WGLELKKSAISLYNTIAITVAEGTDRIIELVQGIGNAIRNIPRRIRQGFEAALQ"
     gene	     <1..83
		     /gene="vpu"
     CDS	     <1..83
		     /gene="vpu"
		     /codon_start="3"
		     /transl_table="1"
		     /product="vpu protein"
		     /protein_id="ABW95362.1"
		     /db_xref="GI:159160513"
		     /translation="ESDGDTEELATMVDMGHLRLLGANDV"
     gene	     <2122..2369
		     /gene="rev"
     CDS	     <2122..2369
		     /gene="rev"
		     /codon_start="3"
		     /transl_table="1"
		     /product="rev protein"
		     /protein_id="ABW95361.1"
		     /db_xref="GI:159160512"
		     /translation="PYPTPEGTRQARKNRRRRWRARQKQIHSISERILVTCLGRPTEP
		     VPLQLPPLERLHINCSESSGASGTQQSQGPTEGVGNP"
     gene	     <2122..2212
		     /gene="tat"
     CDS	     <2122..2212
		     /gene="tat"
		     /codon_start="2"
		     /transl_table="1"
		     /product="tat protein"
		     /protein_id="ABW95360.1"
		     /db_xref="GI:159160511"
		     /translation="PLPHTRGDPTGSEESKKKVESKTETDPFD"
BASE COUNT	917 a	 427 c	  596 g    619 t
ORIGIN
       1 atgagagtga tggggacacg gaggaattgg caacaatggt ggatatgggg catcttaggc 
      61 ttttgggtgc taatgatgtg taatgcaaga aatgcaaaga aattgtgggt cacagtctac 
     121 tatggggtac ctgtgtggaa agaagcaaaa actactctat tttgtgcatc agacgctaaa 
     181 gcatatagca aagaggtgca taatatctgg gctacacatg cttgtgtacc cactgacccc 
     241 aatccacaag aaatgaagtt ggaaaatgta acagaaaatt ttaacatgtg gaaaaatgac 
     301 atggtggacc agatgcatga ggatataatc agtttatggg atcaaagcct caaaccatgt 
     361 gtagagttga ccccactctg tgtcacttta aactgtacta actacaatgg tagtagcagg 
     421 gcaaatgata ataatgtaaa tattacctcc gataatggag aatatggagt aaaaaattgc 
     481 tctttcaata taaccacaga attaagagat aagaaaaagc aagaatatgc acttttttat 
     541 agatctgata taataccact taacaacaca tctgatgaaa atggtggata tagattaata 
     601 aattgtaata cctcagccat aacacaagct tgtccaaagg tctcttttga cccaattcct 
     661 atacattatt gtgctccagc tggttatgcg attctaaagt gtaataataa gacatttaat 
     721 ggaacaggat catgcaataa tgtcagcaca gtacaatgta cacatgggat taagccagtg 
     781 gtatcaactc aactactgtt aaatggtagc ctagcagaag aagacataat aattagatct 
     841 gaaaatctga cagacaatgt caaaacaata atagtacatc ttaataaatc tgtagagatt 
     901 aattgtacaa gacccaataa taatacaagg aaaagtgtga ggataggacc aggacaaaca 
     961 ttctatgcaa caggagaaat aataggaaac attagacaag cacattgcaa cattagggga 
    1021 gaagaatgga ataaagcttt agaagaggta agaaaaaaat taaaacaaca cttccataaa 
    1081 aacataacct ttgcaccatc ctcaggaggg gacccagaaa ttacaacaca tagctttaat 
    1141 tgtagaggag aatttttcta ttgtaataca tcaaaactgt ttaataatac tacatctaat 
    1201 gaaaccatca cactcccatg caaaataaaa caatttataa acatgtggca gggagtagga 
    1261 cgggcaatgt atgcccctcc cattgcaggg agcataacat gtaactcaag tatcacagga 
    1321 atactattga cacgtgatgg aggcaacaac agcagtggga cagagacatt cagacctgga 
    1381 ggaggagata tgagggacaa ttggagaagt gaactatata aatataaagt ggtagaaatt 
    1441 aagccattag gaatagcacc cactgatgca aaaaggagag tggtggagag agaaaaaaga 
    1501 gcagtgggac taggagctgt gttccttggg ttcttgggag cagcagggag cactatgggc 
    1561 gcggcgtcaa tagcgctgac ggtacaggcc agacaattat tgtctggtat agtgcaacag 
    1621 caaagcaatt tgctgagagc catagaggcg caacagcata tgttgcaact cacggtctgg 
    1681 ggcattaaac agctccaggc aagagtcctg gctatagaaa gatacctaga ggatcaacag 
    1741 ctcctaggga tttggggatg ctctggaaaa ctcatctgca ccactgatgt gccttggaat 
    1801 gttagttgga gtaatagaac tcaagaggat atttggagta acatgacctg gatggagtgg 
    1861 gaaaaagaaa ttagtaatta cacaaacaca atatactggt tacttgaaga atcgcaaata 
    1921 cagcaggaaa gaaatgaaaa agatttacta gcattggata gttggaataa tctgtggaat 
    1981 tggtttggta taacaaaatg gctgtggtat ataaaaatat tcataatgat agtaggaggc 
    2041 ttgatagggt taagaataat ttttgctgtg ctctctatag tgaatagagt taggcaggga 
    2101 tactcacctt tgtcatttca gacccttacc ccacacccga ggggacccga caggctcgga 
    2161 agaatcgaag aagaaggtgg agagcaagac agaaacagat ccattcgatt agtgagcgga 
    2221 ttcttgtcac ttgcctggga cgacctacgg agcctgtgcc tcttcagcta ccaccacttg 
    2281 agagacttca tattaattgt agtgagagca gtggagcttc tgggacgcag caatctcagg 
    2341 ggcctacaga gggggtggga aatccttaag tatctaggaa gtcttgtgca atattggggt 
    2401 ctagagctaa aaaagagtgc tattagtctg tataatacca tagcaataac agtagctgaa 
    2461 ggaacagata ggattataga attagtacaa ggaattggta acgctatccg caacatacct 
    2521 agaaggataa gacagggttt tgaagcagct ttgcaataa
//
last modified: Tue May 31 10:56 2022


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