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LOCUS EU166430 2619 bp DNA linear VRL 13-FEB-2008
DEFINITION HIV-1 isolate ZM184F_SGA_TA13 from Zambia envelope glycoprotein
(env) gene, complete cds; and vpu protein (vpu), rev protein (rev),
and tat protein (tat) genes, partial cds
ACCESSION EU166430
VERSION EU166430.1 GI:158957037
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2619)
Show all sequences for reference 1
AUTHORS Salazar-Gonzalez,J.F., Bailes,E., Pham,K.T., Salazar,M.G.,
Guffey,M.B., Keele,B.F., Derdeyn,C.A., Farmer,P., Hunter,E.,
Allen,S., Manigart,O., Mulenga,J., Anderson,J.A., Swanstrom,R.,
Haynes,B.F., Athreya,G.S., Korber,B.T.M., Sharp,P.M., Shaw,G.M. and
Hahn,B.H.
TITLE Deciphering human immunodeficiency virus type 1 transmission and
early envelope diversification by single-genome amplification and
sequencing.
JOURNAL J. Virol.. 82(8); 3952-70 (2008)
PUBMED 18256145
REFERENCE 2 (bases 1 to 2619)
Show all sequences for reference 2
AUTHORS Salazar-Gonzalez,J.F.
TITLE Direct Submission
JOURNAL Submitted (19-SEP-2007) University of Alabama at Birmingham,
Department of Medicine, Kaul 806, 720 20th Street South,
Birmingham, AL 35294, USA
REFERENCE 3
Show all sequences for reference 3
AUTHORS Kraft,C.S., Basu,D., Hawkins,P.A., Hraber,P.T., Chomba,E.,
Mulenga,J., Kilembe,W., Khu,N.H., Derdeyn,C.A., Allen,S.A.,
Manigart,O. and Hunter,E.
TITLE Timing and source of subtype-C HIV-1 superinfection in the newly
infected partner of Zambian couples with disparate viruses.
JOURNAL Retrovirology.. 9(1); 22 (2012)
PUBMED 22433432
COMMENT Annotation information was provided by the author. Some of
theinformation does not have GenBank feature identifiers and is
beingprovided in the comment section. Information in this section
issearchable in HIV Database at Los Alamos
(www.hiv.lanl.gov).##HIVDataBaseData-START##Sequence Name
ZM184F_SGA_TA13Patient code ZM184FPatient sex FSubtype CSample date
Jul 10 2003Sample tissue plasmaCulture method
unculturedAmplification strategy SGA (Single Genome
Amplification)Patient health status earlyDBID
2988988588##HIVDataBaseData-END##
FEATURES Location/Qualifiers
source 1..2619
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="ZM184F_SGA_TA13"
/db_xref="taxon:11676"
/country="Zambia"
/note="subtype: C"
gene 1..2619
/gene="env"
CDS 1..2619
/gene="env"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="ABW85925.1"
/db_xref="GI:158957041"
/translation="MRVMGIPRNCQPWWIWGILGFWMLMIYNVGGNLWVTVYYGVPVW
KEAKTTLFCASDAKAYEKEVHNIWATHACVPTDPNPQEMVLKNVTENFNMWKNDMVDQ
MHEDIISLWDQSLKPCVQLTPICVTLNCSKVNVNVSSSNVRGFNVSSYKGNDTIDREM
RNCSFNATTELRDRKKNEYALFYKLDIVELEREGNQSQSRDYSNYRLINCNTSTIKQA
CPKVSFDPIPIHYCAPAGYAILKCNNKTFNGTGPCNNVSTVQCTHGIKPVVSTQLLLN
GSLAEEGIVIRSENLTDNAKTIIVHLNKPVNITCTRPGNNTRKSVRIGPGQTFYATGD
IIGDIREAHCNITRKNWTDTLKMVEEKLKGYFPNKTITFNSSSGGDLEITTHSFNCRG
EFFYCNTSNLFNYNITNNNVTNITDENVNITLKCRIKQIINMWQGVGQAIYAPPIAGN
ITCKSNITGILLTRDGGDKTKNNTEIFRPGGGNMKDNWRSELYKYKVVEIKPLGIAPT
EAKRRVVEREKRAVGIGAVFLGFLGAAGSTMGAASITLTVQARQLLSGIVQQQSNLLR
AIEAQQHMLQLTVWGIKQLQTRVLAIERYLKDQQLLGIWGCSGKLICTTAVPWNPSWS
NKSLVDIWDNMTWMQWDKEISNYTSTIYGLLEESQSQQEKNEKDLLALDKWNNLWTWF
DITKWLWYIKIFIMVVGGLIGLRIIFTVLSIVNRVRQGYSPLSFQTLTPHPRELGRLG
RIEEEGGEQDRDRSIRLVNGFLAIAWDDLRNLFLFSYHRLRDFILVAARTVELLGRSS
LRGLQRGWEALKYLKNLGQYWGLELKKSAISLLDTIAVTVAEGTDRIIEFVLRVCRAI
CNIPRRIRQGFETALL"
gene <1..83
/gene="vpu"
CDS <1..83
/gene="vpu"
/codon_start="3"
/transl_table="1"
/product="vpu protein"
/protein_id="ABW85924.1"
/db_xref="GI:158957040"
/translation="ESDGDTEELSAMVDMGNLRLLDANDL"
gene <2182..2429
/gene="rev"
CDS <2182..2429
/gene="rev"
/codon_start="3"
/transl_table="1"
/product="rev protein"
/protein_id="ABW85923.1"
/db_xref="GI:158957039"
/translation="PYPTPEGTRQARKNRRRRWRARQRQIHSISERILSDCLGRPAEP
IPLQLPPIERLHIGGSEDCGTSGTQQSQGTAEGVGSS"
gene <2182..2272
/gene="tat"
CDS <2182..2272
/gene="tat"
/codon_start="2"
/transl_table="1"
/product="tat protein"
/protein_id="ABW85922.1"
/db_xref="GI:158957038"
/translation="PLPHTRGNSAGSEESKKKVESKTETDPFD"
BASE COUNT 938 a 435 c 604 g 642 t
ORIGIN
1 atgagagtga tggggatacc gaggaattgt cagccatggt ggatatgggg aatcttaggc
61 ttttggatgc taatgattta taatgtggga ggaaacttgt gggtcacagt ttattatggg
121 gtacctgtgt ggaaagaagc aaaaactact ttattctgtg catcagatgc taaagcatat
181 gagaaagaag tgcataatat ctgggctaca catgcctgtg tacccacaga ccccaaccca
241 caagaaatgg ttttaaaaaa tgtaacagaa aattttaaca tgtggaaaaa tgacatggtg
301 gatcagatgc atgaggatat aatcagctta tgggatcaaa gcctaaagcc atgtgtacag
361 ctgaccccaa tctgtgtcac tttaaactgt agtaaggtta atgttaatgt tagtagctct
421 aatgttcgcg gctttaatgt tagcagctat aagggtaatg ataccataga tagagaaatg
481 agaaattgtt ctttcaatgc aaccacagaa ctaagagata ggaagaagaa tgaatatgca
541 cttttttata aacttgatat agtagaactt gagagggagg ggaaccagtc ccagtccaga
601 gattatagta attatagatt aataaattgt aatacctcaa ccataaaaca agcctgtcca
661 aaggtctctt ttgacccaat tcctatacat tattgtgctc cagctggtta tgcgattcta
721 aagtgtaata ataagacatt caatggaaca ggaccatgca ataatgtcag cacagtacaa
781 tgtacacatg gaattaaacc agtggtatca actcaactac tgttaaatgg tagtctagca
841 gaagaaggga tagtaattag atctgaaaat ctgacagaca atgccaaaac aataatagta
901 catcttaata aacctgtaaa cattacgtgt acaagacccg gcaataatac aagaaaaagt
961 gtgaggatag gaccaggaca aacattctat gcaacaggag acataatagg agatataaga
1021 gaagcacatt gtaacattac taggaaaaat tggactgaca ctttaaaaat ggtagaagaa
1081 aaattaaaag gatacttccc taataaaacc ataacattta actcatcctc aggaggggac
1141 ctagaaatca caacacatag ctttaattgc agaggagaat ttttctattg caatacatca
1201 aacctgttta attataacat tacaaacaat aatgttacaa acattacaga cgagaatgta
1261 aacatcacac tcaaatgcag aataaaacag attataaaca tgtggcaggg ggtaggacaa
1321 gcaatatatg cccctcccat tgcaggaaac ataacatgta aatcaaatat cacaggaata
1381 ctattgacac gcgatggagg cgacaaaaca aagaataaca cagaaatatt cagacctgga
1441 ggaggaaata tgaaggacaa ttggagaagt gaattatata aatataaagt ggtagaaatt
1501 aagccattag gaatagcacc cactgaggca aaaaggagag tggtggagag agaaaaaaga
1561 gcagtgggaa taggagctgt gttccttggg ttcttgggag cagcaggaag cactatgggc
1621 gcggcatcaa taacgctgac ggtacaggcc agacaattgt tgtctggtat agtgcaacag
1681 caaagcaatt tgctgagagc tatagaggcg caacagcata tgttgcaact cactgtctgg
1741 ggcattaaac agctccagac aagagtcctg gctatagaaa gatacctaaa ggatcaacag
1801 ctcctaggaa tttggggctg ctctggaaaa ctcatctgca ccactgctgt gccgtggaac
1861 cctagttgga gtaataaatc tctagtggat atttgggata acatgacttg gatgcagtgg
1921 gataaagaaa ttagtaatta cacaagcaca atatacgggt tgcttgaaga atcgcaaagc
1981 cagcaggaaa agaatgaaaa agatttatta gcattggaca agtggaataa tctgtggact
2041 tggtttgaca taacaaagtg gctgtggtat ataaaaatat tcataatggt agtaggaggc
2101 ttgataggtt taagaataat ttttactgtg ctttctatag taaatagagt taggcaggga
2161 tactcacctt tgtcgttcca gacccttacc ccacacccga gggaactcgg caggctcgga
2221 agaatcgaag aagaaggtgg agagcaagac agagacagat ccattcgatt agtgaacgga
2281 ttcttagcga ttgcctggga cgacctgcgg aacctattcc tcttcagcta ccaccgattg
2341 agagacttca tattggtggc agcgaggact gtggaacttc tgggacgcag cagtctcagg
2401 ggactgcaga gggggtggga agctcttaag tacctgaaaa atcttgggca gtactggggt
2461 ctggaactaa aaaagagtgc tattagtttg cttgatacca tagcagtaac agtagctgaa
2521 ggaacagata gaattataga atttgtacta agagtttgta gagctatctg caacatacct
2581 agaagaataa gacagggatt tgaaacagct ttgctataa
//
last modified: Tue May 31 10:56 2022