HIV Databases HIV Databases home HIV Databases home
HIV Sequence Database



Download: ENTIRE SEQUENCE SEQUENCE FRAGMENT start end
Format:  
View NCBI entry		Download GenBank file		Graphics View		Download GFF3 File

LOCUS	    EU166430		    2619 bp    DNA     linear	VRL 13-FEB-2008
DEFINITION  HIV-1 isolate ZM184F_SGA_TA13 from Zambia envelope glycoprotein
	    (env) gene, complete cds; and vpu protein (vpu), rev protein (rev),
	    and tat protein (tat) genes, partial cds
ACCESSION   EU166430
VERSION     EU166430.1 GI:158957037
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2619)
            Show all sequences for reference 1
  AUTHORS   Salazar-Gonzalez,J.F., Bailes,E., Pham,K.T., Salazar,M.G.,
	    Guffey,M.B., Keele,B.F., Derdeyn,C.A., Farmer,P., Hunter,E.,
	    Allen,S., Manigart,O., Mulenga,J., Anderson,J.A., Swanstrom,R.,
	    Haynes,B.F., Athreya,G.S., Korber,B.T.M., Sharp,P.M., Shaw,G.M. and
	    Hahn,B.H.
  TITLE     Deciphering human immunodeficiency virus type 1 transmission and
	    early envelope diversification by single-genome amplification and
	    sequencing.
  JOURNAL   J. Virol.. 82(8); 3952-70 (2008)
  PUBMED    18256145
REFERENCE   2 (bases 1 to 2619)
            Show all sequences for reference 2
  AUTHORS   Salazar-Gonzalez,J.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-SEP-2007) University of Alabama at Birmingham,
	    Department of Medicine, Kaul 806, 720 20th Street South,
	    Birmingham, AL 35294, USA
REFERENCE   3
            Show all sequences for reference 3
  AUTHORS   Kraft,C.S., Basu,D., Hawkins,P.A., Hraber,P.T., Chomba,E.,
	    Mulenga,J., Kilembe,W., Khu,N.H., Derdeyn,C.A., Allen,S.A.,
	    Manigart,O. and Hunter,E.
  TITLE     Timing and source of subtype-C HIV-1 superinfection in the newly
	    infected partner of Zambian couples with disparate viruses.
  JOURNAL   Retrovirology.. 9(1); 22 (2012)
  PUBMED    22433432
COMMENT     Annotation information was provided by the author. Some of
	    theinformation does not have GenBank feature identifiers and is
	    beingprovided in the comment section. Information in this section
	    issearchable in HIV Database at Los Alamos
	    (www.hiv.lanl.gov).##HIVDataBaseData-START##Sequence Name
	    ZM184F_SGA_TA13Patient code ZM184FPatient sex FSubtype CSample date
	    Jul 10 2003Sample tissue plasmaCulture method
	    unculturedAmplification strategy SGA (Single Genome
	    Amplification)Patient health status earlyDBID
	    2988988588##HIVDataBaseData-END##
FEATURES             Location/Qualifiers
     source	     1..2619
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="ZM184F_SGA_TA13"
		     /db_xref="taxon:11676"
		     /country="Zambia"
		     /note="subtype: C"
     gene	     1..2619
		     /gene="env"
     CDS	     1..2619
		     /gene="env"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="ABW85925.1"
		     /db_xref="GI:158957041"
		     /translation="MRVMGIPRNCQPWWIWGILGFWMLMIYNVGGNLWVTVYYGVPVW
		     KEAKTTLFCASDAKAYEKEVHNIWATHACVPTDPNPQEMVLKNVTENFNMWKNDMVDQ
		     MHEDIISLWDQSLKPCVQLTPICVTLNCSKVNVNVSSSNVRGFNVSSYKGNDTIDREM
		     RNCSFNATTELRDRKKNEYALFYKLDIVELEREGNQSQSRDYSNYRLINCNTSTIKQA
		     CPKVSFDPIPIHYCAPAGYAILKCNNKTFNGTGPCNNVSTVQCTHGIKPVVSTQLLLN
		     GSLAEEGIVIRSENLTDNAKTIIVHLNKPVNITCTRPGNNTRKSVRIGPGQTFYATGD
		     IIGDIREAHCNITRKNWTDTLKMVEEKLKGYFPNKTITFNSSSGGDLEITTHSFNCRG
		     EFFYCNTSNLFNYNITNNNVTNITDENVNITLKCRIKQIINMWQGVGQAIYAPPIAGN
		     ITCKSNITGILLTRDGGDKTKNNTEIFRPGGGNMKDNWRSELYKYKVVEIKPLGIAPT
		     EAKRRVVEREKRAVGIGAVFLGFLGAAGSTMGAASITLTVQARQLLSGIVQQQSNLLR
		     AIEAQQHMLQLTVWGIKQLQTRVLAIERYLKDQQLLGIWGCSGKLICTTAVPWNPSWS
		     NKSLVDIWDNMTWMQWDKEISNYTSTIYGLLEESQSQQEKNEKDLLALDKWNNLWTWF
		     DITKWLWYIKIFIMVVGGLIGLRIIFTVLSIVNRVRQGYSPLSFQTLTPHPRELGRLG
		     RIEEEGGEQDRDRSIRLVNGFLAIAWDDLRNLFLFSYHRLRDFILVAARTVELLGRSS
		     LRGLQRGWEALKYLKNLGQYWGLELKKSAISLLDTIAVTVAEGTDRIIEFVLRVCRAI
		     CNIPRRIRQGFETALL"
     gene	     <1..83
		     /gene="vpu"
     CDS	     <1..83
		     /gene="vpu"
		     /codon_start="3"
		     /transl_table="1"
		     /product="vpu protein"
		     /protein_id="ABW85924.1"
		     /db_xref="GI:158957040"
		     /translation="ESDGDTEELSAMVDMGNLRLLDANDL"
     gene	     <2182..2429
		     /gene="rev"
     CDS	     <2182..2429
		     /gene="rev"
		     /codon_start="3"
		     /transl_table="1"
		     /product="rev protein"
		     /protein_id="ABW85923.1"
		     /db_xref="GI:158957039"
		     /translation="PYPTPEGTRQARKNRRRRWRARQRQIHSISERILSDCLGRPAEP
		     IPLQLPPIERLHIGGSEDCGTSGTQQSQGTAEGVGSS"
     gene	     <2182..2272
		     /gene="tat"
     CDS	     <2182..2272
		     /gene="tat"
		     /codon_start="2"
		     /transl_table="1"
		     /product="tat protein"
		     /protein_id="ABW85922.1"
		     /db_xref="GI:158957038"
		     /translation="PLPHTRGNSAGSEESKKKVESKTETDPFD"
BASE COUNT	938 a	 435 c	  604 g    642 t
ORIGIN
       1 atgagagtga tggggatacc gaggaattgt cagccatggt ggatatgggg aatcttaggc 
      61 ttttggatgc taatgattta taatgtggga ggaaacttgt gggtcacagt ttattatggg 
     121 gtacctgtgt ggaaagaagc aaaaactact ttattctgtg catcagatgc taaagcatat 
     181 gagaaagaag tgcataatat ctgggctaca catgcctgtg tacccacaga ccccaaccca 
     241 caagaaatgg ttttaaaaaa tgtaacagaa aattttaaca tgtggaaaaa tgacatggtg 
     301 gatcagatgc atgaggatat aatcagctta tgggatcaaa gcctaaagcc atgtgtacag 
     361 ctgaccccaa tctgtgtcac tttaaactgt agtaaggtta atgttaatgt tagtagctct 
     421 aatgttcgcg gctttaatgt tagcagctat aagggtaatg ataccataga tagagaaatg 
     481 agaaattgtt ctttcaatgc aaccacagaa ctaagagata ggaagaagaa tgaatatgca 
     541 cttttttata aacttgatat agtagaactt gagagggagg ggaaccagtc ccagtccaga 
     601 gattatagta attatagatt aataaattgt aatacctcaa ccataaaaca agcctgtcca 
     661 aaggtctctt ttgacccaat tcctatacat tattgtgctc cagctggtta tgcgattcta 
     721 aagtgtaata ataagacatt caatggaaca ggaccatgca ataatgtcag cacagtacaa 
     781 tgtacacatg gaattaaacc agtggtatca actcaactac tgttaaatgg tagtctagca 
     841 gaagaaggga tagtaattag atctgaaaat ctgacagaca atgccaaaac aataatagta 
     901 catcttaata aacctgtaaa cattacgtgt acaagacccg gcaataatac aagaaaaagt 
     961 gtgaggatag gaccaggaca aacattctat gcaacaggag acataatagg agatataaga 
    1021 gaagcacatt gtaacattac taggaaaaat tggactgaca ctttaaaaat ggtagaagaa 
    1081 aaattaaaag gatacttccc taataaaacc ataacattta actcatcctc aggaggggac 
    1141 ctagaaatca caacacatag ctttaattgc agaggagaat ttttctattg caatacatca 
    1201 aacctgttta attataacat tacaaacaat aatgttacaa acattacaga cgagaatgta 
    1261 aacatcacac tcaaatgcag aataaaacag attataaaca tgtggcaggg ggtaggacaa 
    1321 gcaatatatg cccctcccat tgcaggaaac ataacatgta aatcaaatat cacaggaata 
    1381 ctattgacac gcgatggagg cgacaaaaca aagaataaca cagaaatatt cagacctgga 
    1441 ggaggaaata tgaaggacaa ttggagaagt gaattatata aatataaagt ggtagaaatt 
    1501 aagccattag gaatagcacc cactgaggca aaaaggagag tggtggagag agaaaaaaga 
    1561 gcagtgggaa taggagctgt gttccttggg ttcttgggag cagcaggaag cactatgggc 
    1621 gcggcatcaa taacgctgac ggtacaggcc agacaattgt tgtctggtat agtgcaacag 
    1681 caaagcaatt tgctgagagc tatagaggcg caacagcata tgttgcaact cactgtctgg 
    1741 ggcattaaac agctccagac aagagtcctg gctatagaaa gatacctaaa ggatcaacag 
    1801 ctcctaggaa tttggggctg ctctggaaaa ctcatctgca ccactgctgt gccgtggaac 
    1861 cctagttgga gtaataaatc tctagtggat atttgggata acatgacttg gatgcagtgg 
    1921 gataaagaaa ttagtaatta cacaagcaca atatacgggt tgcttgaaga atcgcaaagc 
    1981 cagcaggaaa agaatgaaaa agatttatta gcattggaca agtggaataa tctgtggact 
    2041 tggtttgaca taacaaagtg gctgtggtat ataaaaatat tcataatggt agtaggaggc 
    2101 ttgataggtt taagaataat ttttactgtg ctttctatag taaatagagt taggcaggga 
    2161 tactcacctt tgtcgttcca gacccttacc ccacacccga gggaactcgg caggctcgga 
    2221 agaatcgaag aagaaggtgg agagcaagac agagacagat ccattcgatt agtgaacgga 
    2281 ttcttagcga ttgcctggga cgacctgcgg aacctattcc tcttcagcta ccaccgattg 
    2341 agagacttca tattggtggc agcgaggact gtggaacttc tgggacgcag cagtctcagg 
    2401 ggactgcaga gggggtggga agctcttaag tacctgaaaa atcttgggca gtactggggt 
    2461 ctggaactaa aaaagagtgc tattagtttg cttgatacca tagcagtaac agtagctgaa 
    2521 ggaacagata gaattataga atttgtacta agagtttgta gagctatctg caacatacct 
    2581 agaagaataa gacagggatt tgaaacagct ttgctataa
//
last modified: Tue May 31 10:56 2022


Questions or comments? Contact us at seq-info@lanl.gov.