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LOCUS	    EU166372		    2595 bp    DNA     linear	VRL 13-FEB-2008
DEFINITION  HIV-1 isolate ZM178F_SGA_C13 from Zambia envelope glycoprotein
	    (env) gene, complete cds; and vpu protein (vpu), rev protein (rev),
	    and tat protein (tat) genes, partial cds
ACCESSION   EU166372
VERSION     EU166372.1 GI:158957172
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2595)
            Show all sequences for reference 1
  AUTHORS   Salazar-Gonzalez,J.F., Bailes,E., Pham,K.T., Salazar,M.G.,
	    Guffey,M.B., Keele,B.F., Derdeyn,C.A., Farmer,P., Hunter,E.,
	    Allen,S., Manigart,O., Mulenga,J., Anderson,J.A., Swanstrom,R.,
	    Haynes,B.F., Athreya,G.S., Korber,B.T.M., Sharp,P.M., Shaw,G.M. and
	    Hahn,B.H.
  TITLE     Deciphering human immunodeficiency virus type 1 transmission and
	    early envelope diversification by single-genome amplification and
	    sequencing.
  JOURNAL   J. Virol.. 82(8); 3952-70 (2008)
  PUBMED    18256145
REFERENCE   2 (bases 1 to 2595)
            Show all sequences for reference 2
  AUTHORS   Salazar-Gonzalez,J.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-SEP-2007) University of Alabama at Birmingham,
	    Department of Medicine, Kaul 806, 720 20th Street South,
	    Birmingham, AL 35294, USA
REFERENCE   3
            Show all sequences for reference 3
  AUTHORS   Kraft,C.S., Basu,D., Hawkins,P.A., Hraber,P.T., Chomba,E.,
	    Mulenga,J., Kilembe,W., Khu,N.H., Derdeyn,C.A., Allen,S.A.,
	    Manigart,O. and Hunter,E.
  TITLE     Timing and source of subtype-C HIV-1 superinfection in the newly
	    infected partner of Zambian couples with disparate viruses.
  JOURNAL   Retrovirology.. 9(1); 22 (2012)
  PUBMED    22433432
COMMENT     Annotation information was provided by the author. Some of
	    theinformation does not have GenBank feature identifiers and is
	    beingprovided in the comment section. Information in this section
	    issearchable in HIV Database at Los Alamos
	    (www.hiv.lanl.gov).##HIVDataBaseData-START##Sequence Name
	    ZM178F_SGA_C13Patient code ZM178FPatient sex FSubtype CSample date
	    Jan 18 2003Sample tissue plasmaCulture method
	    unculturedAmplification strategy SGA (Single Genome
	    Amplification)Patient health status earlyDBID
	    1719398028##HIVDataBaseData-END##
FEATURES             Location/Qualifiers
     source	     1..2595
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="ZM178F_SGA_C13"
		     /db_xref="taxon:11676"
		     /country="Zambia"
		     /note="subtype: C"
     gene	     1..2595
		     /gene="env"
     CDS	     1..2595
		     /gene="env"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="ABW86032.1"
		     /db_xref="GI:158957176"
		     /translation="MRVMGILRNCQQWWIWGVLGFWMLMVCNMQNMWVTVYYGVPVWK
		     EAKTTLFCASDAKAYEKEVHNVWATHACVPTDPNPQEIILKNVTENFNMWKNDMVEQM
		     HEDIISLWDQSLKPCVKLTPLCVTLNCSDATSDNDNSSSLNISSDLNISKTLNGEIKN
		     CSFNVTTELKDKKKKENALFYRLDIVPLNGSASGYRLINCNTSTIVQACPKVSFDPIP
		     IHYCAPAGFAILKCNEKTFKGKGPCNNVSTVQCTHGIKPVVSTQLLLNGSLAEEDIII
		     RSENLTNNVKTIIVHLNESVWINCSRPNNNTRKSVRIGPGQTFYATGDIIGDIRQAHC
		     NISESQWNKTIRRVSEKLREHFPNNTKIKFTQPAGGDLEIITHSFNCGGEFFYCNTSE
		     LFHGTYLPNSTVMLNDTSNKTITLLCRIKQIINMWQEVGRAMYAPPIAGSIICNSSIT
		     GLLLTRDGGDGNGKNTTGNDTETFRPAGGDMRDNWRNELYKYKVVEINPLGIAPTKAK
		     RRVVEREKRAVGIGAVLLGFLGAAGSTMGAASITLTVQARQLLSGIVQQQSNLLRAIE
		     AQQHMLQLTVWGIKQLQTRVLAIERYLKDQQLLGIWGCSGKLICTTAVTWNSSWNNRS
		     YDEIWNSNLTWMEWEKEISNYTDIIYNLLEISQNQQEANEKDLLALDKWKNLWNWFDI
		     TSWLWYIKIFIMIVGGLIGLRIVFAVLSIVNRVRQGYSPLSFQTLTPTTPRGPDRLER
		     IEEEGGEQDRSRSIRLVNGFLAIVWDDLRSLCIFIYHRLRDFTLVTARTVELLGQRGW
		     EILKYLGNLVQYWGLELKKSAISLLDTIAIVTTEGTDRIIELIQRICRAIYNIPRRIR
		     QGFEAALL"
     gene	     <1..83
		     /gene="vpu"
     CDS	     <1..83
		     /gene="vpu"
		     /codon_start="3"
		     /transl_table="1"
		     /product="vpu protein"
		     /protein_id="ABW86031.1"
		     /db_xref="GI:158957175"
		     /translation="ESDGDIEELSTMVDMGRLGLLDAHGL"
     gene	     <2176..2462
		     /gene="rev"
     CDS	     <2176..2462
		     /gene="rev"
		     /codon_start="3"
		     /transl_table="1"
		     /product="rev protein"
		     /protein_id="ABW86030.1"
		     /db_xref="GI:158957174"
		     /translation="PYPNNSEGTRQARKNRRRRWRARQKQIHSLSQRILSDCLGRPEE
		     PVHFHLPPIERLHIGDSEDSGTSGTEGVGNPQVSGKPCAVLGSGTKEECH"
     gene	     <2176..2269
		     /gene="tat"
     CDS	     <2176..2269
		     /gene="tat"
		     /codon_start="2"
		     /transl_table="1"
		     /product="tat protein"
		     /protein_id="ABW86029.1"
		     /db_xref="GI:158957173"
		     /translation="PLPQQLRGDPTGSKESKKKVESKTEADPFA"
BASE COUNT	926 a	 426 c	  599 g    644 t
ORIGIN
       1 atgagagtga tggggatatt gaggaattgt caacaatggt ggatatgggg cgtcttgggc 
      61 ttttggatgc tcatggtttg taatatgcag aacatgtggg tcactgtcta ctatggggta 
     121 cctgtgtgga aagaagcaaa aactacttta ttttgtgcat cagatgctaa agcatatgag 
     181 aaggaagtgc ataatgtttg ggctacacat gcctgtgtac ccacagaccc caacccacaa 
     241 gaaataatat tgaaaaatgt aacagaaaat tttaatatgt ggaaaaatga catggtggag 
     301 cagatgcatg aggatataat cagtttatgg gatcaaagcc taaagccatg tgtaaagttg 
     361 accccactct gtgtcacttt aaactgcagt gatgctacga gtgataatga taacagtagt 
     421 agccttaaca tcagtagtga ccttaacatc agtaaaaccc tgaatggaga aataaagaat 
     481 tgctctttca atgtaaccac agaattaaaa gacaagaaaa agaaagaaaa tgcacttttt 
     541 tatagacttg atatagtacc acttaatggc agtgctagtg ggtatagatt aataaattgt 
     601 aatacctcaa ccatagtaca agcctgtcca aaggtttctt ttgacccaat tcctatacat 
     661 tattgtgctc cagctggttt tgcgattcta aagtgtaatg agaagacatt caagggaaaa 
     721 ggaccatgta ataatgtcag tacagtacaa tgtacacatg gaattaagcc agtggtatca 
     781 actcaactac tgttaaatgg tagcctagca gaagaggata taataattag atctgaaaat 
     841 ctgacaaaca atgtcaaaac aataatagta catcttaatg aatctgtatg gattaattgt 
     901 tcaagaccca ataataatac aaggaaaagt gtaaggatag gaccaggaca aacattctat 
     961 gcaacaggag acataatagg agatataaga caagcacatt gtaacattag tgaaagtcag 
    1021 tggaataaaa ctatacgaag ggtaagtgaa aaactaagag aacacttccc taataacacc 
    1081 aaaataaaat ttacacaacc cgcaggaggg gatctagaaa ttataacaca tagctttaat 
    1141 tgtggaggag aatttttcta ttgcaataca tcagaattgt ttcatggtac atacctgcct 
    1201 aatagtacag tcatgcttaa tgatacttca aacaaaacca tcacactgct atgcagaata 
    1261 aaacaaatta taaatatgtg gcaggaggta gggcgagcaa tgtatgcccc acccattgca 
    1321 ggaagcataa tatgcaactc aagtattaca gggctactat tgacacgtga tggaggagat 
    1381 ggaaatggaa agaatactac aggtaacgat acagagacat tcagacctgc aggaggagat 
    1441 atgagggaca attggagaaa tgaattatat aaatataagg tggtagaaat taacccatta 
    1501 ggaatagcac ccactaaagc aaaaaggaga gtggtggaga gagagaaaag agcagtggga 
    1561 ataggagctg tactccttgg gttcttggga gcagcaggaa gcactatggg cgcagcatca 
    1621 ataacgctga cggtacaggc cagacaatta ttgtctggta tagtgcaaca gcaaagcaat 
    1681 ttgctgaggg ctatagaggc gcaacaacat atgttgcaac tcacggtctg gggcattaaa 
    1741 cagctccaga caagagtcct ggctatagaa agatacctaa aggatcaaca gctcctagga 
    1801 atttggggat gctctggaaa actcatctgc accactgctg tgacttggaa ttctagttgg 
    1861 aataatagat cttatgacga gatttggaat agtaatctga cctggatgga gtgggagaag 
    1921 gaaattagta attacacaga cataatatac aatttgcttg agatctcgca aaaccagcag 
    1981 gaagcaaatg aaaaggattt actagcattg gacaagtgga aaaatctatg gaattggttt 
    2041 gacataacaa gttggctgtg gtacataaaa atattcataa tgatagtagg aggcttaata 
    2101 ggtttgagaa tagtttttgc tgtactttct atagtgaata gagttaggca gggatactca 
    2161 cctttgtcat ttcagaccct taccccaaca actccgaggg gacccgacag gctcgaaaga 
    2221 atcgaagaag aaggtggaga gcaagacaga agcagatcca ttcgcttagt caacggattc 
    2281 ttagcgattg tctgggacga cctgaggagc ctgtgcattt tcatctacca ccgattgaga 
    2341 gacttcacat tggtgacagc gaggacagtg gaacttctgg gacagagggg gtgggaaatc 
    2401 ctcaagtatc tgggaaacct tgtgcagtat tggggtctgg aactaaagaa gagtgccatt 
    2461 agtctgcttg ataccatagc aatagtaaca actgagggaa cagataggat tatagaatta 
    2521 atacaaagaa tttgtagagc tatctacaac atacctagaa gaataagaca gggctttgaa 
    2581 gcagctttgc tataa
//
last modified: Tue May 31 10:56 2022


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