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LOCUS EU166372 2595 bp DNA linear VRL 13-FEB-2008
DEFINITION HIV-1 isolate ZM178F_SGA_C13 from Zambia envelope glycoprotein
(env) gene, complete cds; and vpu protein (vpu), rev protein (rev),
and tat protein (tat) genes, partial cds
ACCESSION EU166372
VERSION EU166372.1 GI:158957172
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2595)
Show all sequences for reference 1
AUTHORS Salazar-Gonzalez,J.F., Bailes,E., Pham,K.T., Salazar,M.G.,
Guffey,M.B., Keele,B.F., Derdeyn,C.A., Farmer,P., Hunter,E.,
Allen,S., Manigart,O., Mulenga,J., Anderson,J.A., Swanstrom,R.,
Haynes,B.F., Athreya,G.S., Korber,B.T.M., Sharp,P.M., Shaw,G.M. and
Hahn,B.H.
TITLE Deciphering human immunodeficiency virus type 1 transmission and
early envelope diversification by single-genome amplification and
sequencing.
JOURNAL J. Virol.. 82(8); 3952-70 (2008)
PUBMED 18256145
REFERENCE 2 (bases 1 to 2595)
Show all sequences for reference 2
AUTHORS Salazar-Gonzalez,J.F.
TITLE Direct Submission
JOURNAL Submitted (19-SEP-2007) University of Alabama at Birmingham,
Department of Medicine, Kaul 806, 720 20th Street South,
Birmingham, AL 35294, USA
REFERENCE 3
Show all sequences for reference 3
AUTHORS Kraft,C.S., Basu,D., Hawkins,P.A., Hraber,P.T., Chomba,E.,
Mulenga,J., Kilembe,W., Khu,N.H., Derdeyn,C.A., Allen,S.A.,
Manigart,O. and Hunter,E.
TITLE Timing and source of subtype-C HIV-1 superinfection in the newly
infected partner of Zambian couples with disparate viruses.
JOURNAL Retrovirology.. 9(1); 22 (2012)
PUBMED 22433432
COMMENT Annotation information was provided by the author. Some of
theinformation does not have GenBank feature identifiers and is
beingprovided in the comment section. Information in this section
issearchable in HIV Database at Los Alamos
(www.hiv.lanl.gov).##HIVDataBaseData-START##Sequence Name
ZM178F_SGA_C13Patient code ZM178FPatient sex FSubtype CSample date
Jan 18 2003Sample tissue plasmaCulture method
unculturedAmplification strategy SGA (Single Genome
Amplification)Patient health status earlyDBID
1719398028##HIVDataBaseData-END##
FEATURES Location/Qualifiers
source 1..2595
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="ZM178F_SGA_C13"
/db_xref="taxon:11676"
/country="Zambia"
/note="subtype: C"
gene 1..2595
/gene="env"
CDS 1..2595
/gene="env"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="ABW86032.1"
/db_xref="GI:158957176"
/translation="MRVMGILRNCQQWWIWGVLGFWMLMVCNMQNMWVTVYYGVPVWK
EAKTTLFCASDAKAYEKEVHNVWATHACVPTDPNPQEIILKNVTENFNMWKNDMVEQM
HEDIISLWDQSLKPCVKLTPLCVTLNCSDATSDNDNSSSLNISSDLNISKTLNGEIKN
CSFNVTTELKDKKKKENALFYRLDIVPLNGSASGYRLINCNTSTIVQACPKVSFDPIP
IHYCAPAGFAILKCNEKTFKGKGPCNNVSTVQCTHGIKPVVSTQLLLNGSLAEEDIII
RSENLTNNVKTIIVHLNESVWINCSRPNNNTRKSVRIGPGQTFYATGDIIGDIRQAHC
NISESQWNKTIRRVSEKLREHFPNNTKIKFTQPAGGDLEIITHSFNCGGEFFYCNTSE
LFHGTYLPNSTVMLNDTSNKTITLLCRIKQIINMWQEVGRAMYAPPIAGSIICNSSIT
GLLLTRDGGDGNGKNTTGNDTETFRPAGGDMRDNWRNELYKYKVVEINPLGIAPTKAK
RRVVEREKRAVGIGAVLLGFLGAAGSTMGAASITLTVQARQLLSGIVQQQSNLLRAIE
AQQHMLQLTVWGIKQLQTRVLAIERYLKDQQLLGIWGCSGKLICTTAVTWNSSWNNRS
YDEIWNSNLTWMEWEKEISNYTDIIYNLLEISQNQQEANEKDLLALDKWKNLWNWFDI
TSWLWYIKIFIMIVGGLIGLRIVFAVLSIVNRVRQGYSPLSFQTLTPTTPRGPDRLER
IEEEGGEQDRSRSIRLVNGFLAIVWDDLRSLCIFIYHRLRDFTLVTARTVELLGQRGW
EILKYLGNLVQYWGLELKKSAISLLDTIAIVTTEGTDRIIELIQRICRAIYNIPRRIR
QGFEAALL"
gene <1..83
/gene="vpu"
CDS <1..83
/gene="vpu"
/codon_start="3"
/transl_table="1"
/product="vpu protein"
/protein_id="ABW86031.1"
/db_xref="GI:158957175"
/translation="ESDGDIEELSTMVDMGRLGLLDAHGL"
gene <2176..2462
/gene="rev"
CDS <2176..2462
/gene="rev"
/codon_start="3"
/transl_table="1"
/product="rev protein"
/protein_id="ABW86030.1"
/db_xref="GI:158957174"
/translation="PYPNNSEGTRQARKNRRRRWRARQKQIHSLSQRILSDCLGRPEE
PVHFHLPPIERLHIGDSEDSGTSGTEGVGNPQVSGKPCAVLGSGTKEECH"
gene <2176..2269
/gene="tat"
CDS <2176..2269
/gene="tat"
/codon_start="2"
/transl_table="1"
/product="tat protein"
/protein_id="ABW86029.1"
/db_xref="GI:158957173"
/translation="PLPQQLRGDPTGSKESKKKVESKTEADPFA"
BASE COUNT 926 a 426 c 599 g 644 t
ORIGIN
1 atgagagtga tggggatatt gaggaattgt caacaatggt ggatatgggg cgtcttgggc
61 ttttggatgc tcatggtttg taatatgcag aacatgtggg tcactgtcta ctatggggta
121 cctgtgtgga aagaagcaaa aactacttta ttttgtgcat cagatgctaa agcatatgag
181 aaggaagtgc ataatgtttg ggctacacat gcctgtgtac ccacagaccc caacccacaa
241 gaaataatat tgaaaaatgt aacagaaaat tttaatatgt ggaaaaatga catggtggag
301 cagatgcatg aggatataat cagtttatgg gatcaaagcc taaagccatg tgtaaagttg
361 accccactct gtgtcacttt aaactgcagt gatgctacga gtgataatga taacagtagt
421 agccttaaca tcagtagtga ccttaacatc agtaaaaccc tgaatggaga aataaagaat
481 tgctctttca atgtaaccac agaattaaaa gacaagaaaa agaaagaaaa tgcacttttt
541 tatagacttg atatagtacc acttaatggc agtgctagtg ggtatagatt aataaattgt
601 aatacctcaa ccatagtaca agcctgtcca aaggtttctt ttgacccaat tcctatacat
661 tattgtgctc cagctggttt tgcgattcta aagtgtaatg agaagacatt caagggaaaa
721 ggaccatgta ataatgtcag tacagtacaa tgtacacatg gaattaagcc agtggtatca
781 actcaactac tgttaaatgg tagcctagca gaagaggata taataattag atctgaaaat
841 ctgacaaaca atgtcaaaac aataatagta catcttaatg aatctgtatg gattaattgt
901 tcaagaccca ataataatac aaggaaaagt gtaaggatag gaccaggaca aacattctat
961 gcaacaggag acataatagg agatataaga caagcacatt gtaacattag tgaaagtcag
1021 tggaataaaa ctatacgaag ggtaagtgaa aaactaagag aacacttccc taataacacc
1081 aaaataaaat ttacacaacc cgcaggaggg gatctagaaa ttataacaca tagctttaat
1141 tgtggaggag aatttttcta ttgcaataca tcagaattgt ttcatggtac atacctgcct
1201 aatagtacag tcatgcttaa tgatacttca aacaaaacca tcacactgct atgcagaata
1261 aaacaaatta taaatatgtg gcaggaggta gggcgagcaa tgtatgcccc acccattgca
1321 ggaagcataa tatgcaactc aagtattaca gggctactat tgacacgtga tggaggagat
1381 ggaaatggaa agaatactac aggtaacgat acagagacat tcagacctgc aggaggagat
1441 atgagggaca attggagaaa tgaattatat aaatataagg tggtagaaat taacccatta
1501 ggaatagcac ccactaaagc aaaaaggaga gtggtggaga gagagaaaag agcagtggga
1561 ataggagctg tactccttgg gttcttggga gcagcaggaa gcactatggg cgcagcatca
1621 ataacgctga cggtacaggc cagacaatta ttgtctggta tagtgcaaca gcaaagcaat
1681 ttgctgaggg ctatagaggc gcaacaacat atgttgcaac tcacggtctg gggcattaaa
1741 cagctccaga caagagtcct ggctatagaa agatacctaa aggatcaaca gctcctagga
1801 atttggggat gctctggaaa actcatctgc accactgctg tgacttggaa ttctagttgg
1861 aataatagat cttatgacga gatttggaat agtaatctga cctggatgga gtgggagaag
1921 gaaattagta attacacaga cataatatac aatttgcttg agatctcgca aaaccagcag
1981 gaagcaaatg aaaaggattt actagcattg gacaagtgga aaaatctatg gaattggttt
2041 gacataacaa gttggctgtg gtacataaaa atattcataa tgatagtagg aggcttaata
2101 ggtttgagaa tagtttttgc tgtactttct atagtgaata gagttaggca gggatactca
2161 cctttgtcat ttcagaccct taccccaaca actccgaggg gacccgacag gctcgaaaga
2221 atcgaagaag aaggtggaga gcaagacaga agcagatcca ttcgcttagt caacggattc
2281 ttagcgattg tctgggacga cctgaggagc ctgtgcattt tcatctacca ccgattgaga
2341 gacttcacat tggtgacagc gaggacagtg gaacttctgg gacagagggg gtgggaaatc
2401 ctcaagtatc tgggaaacct tgtgcagtat tggggtctgg aactaaagaa gagtgccatt
2461 agtctgcttg ataccatagc aatagtaaca actgagggaa cagataggat tatagaatta
2521 atacaaagaa tttgtagagc tatctacaac atacctagaa gaataagaca gggctttgaa
2581 gcagctttgc tataa
//
last modified: Tue May 31 10:56 2022