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LOCUS	    EU125961		     762 bp    DNA     linear	VRL 24-SEP-2007
DEFINITION  HIV-1 isolate INU161 from Uganda pol protein (pol) gene, partial
	    cds
ACCESSION   EU125961
VERSION     EU125961.1 GI:157366522
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 762)
            Show all sequences for reference 1
  AUTHORS   Troyer,R.M., Lalonde,M.S., Fraundorf,E., Demers,K.R., Kyeyune,F.,
	    Mugyenyi,P., Syed,A., Whalen,C.C., Bajunirwe,F. and Arts,E.J.
  TITLE     A radiolabeled oligonucleotide ligation assay demonstrates the high
	    frequency of nevirapine resistance mutations in HIV type 1
	    quasispecies of NVP-treated and untreated mother-infant pairs from
	    Uganda.
  JOURNAL   AIDS Res. Hum. Retroviruses. 24(2); 235-50 (2008)
  PUBMED    18284323
REFERENCE   2 (bases 1 to 762)
            Show all sequences for reference 2
  AUTHORS   Troyer,R.M., Lalonde,M.S. and Arts,E.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-AUG-2007) Department of Medicine, Division of
	    Infectious Diseases, Case Western Reserve University, 2109 Adelbert
	    Road, Cleveland, OH 44106, USA
FEATURES             Location/Qualifiers
     source	     1..762
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="INU161"
		     /db_xref="taxon:11676"
		     /country="Uganda"
     gene	     <1..>762
		     /gene="pol"
     CDS	     <1..>762
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ABV45349.1"
		     /db_xref="GI:157366523"
		     /translation="TPIFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLK
		     KKKSVTVLDVGDAYFSVPLDENFRKYTAFTIPSINNETPGTRYQYNVLPQGWKGSPAI
		     FQSSMTKILEPFRLQNPGIIIYQYMDDLYVGSDLEIGQHRAKVEELRAHLLSWGFTTP
		     DKKHQKEPPFLWMGYELHPDKWTVQPIQLPDKDSWTVNDIQKLVGKLNWASQIYAGIK
		     VKQLCKLLRGAKALTDIVTLTEEAELELAENREILK"
BASE COUNT	294 a	 131 c	  162 g    175 t
ORIGIN
       1 actccaatat ttgctataaa gaaaaaagac agcactaaat ggagaaaatt agtagatttt 
      61 agagagctca ataaaagaac tcaggacttc tgggaagttc aattaggtat accgcatccc 
     121 gcaggtttaa aaaagaagaa atcagtaacg gtgctggatg tgggggacgc atatttctca 
     181 gttcctttag atgaaaactt tagaaaatat actgcattca ccatacctag tataaacaat 
     241 gagacaccag gaaccaggta tcagtacaat gtgcttccac agggatggaa aggatcacca 
     301 gcaatattcc agagtagcat gacaaaaatc ttagagccct ttagattaca gaatccagga 
     361 ataattatct atcaatacat ggatgacttg tatgtaggat ctgatttaga aatagggcag 
     421 catagagcaa aagtagagga gttaagagct catctattga gttggggatt tactacacca 
     481 gacaagaagc atcagaaaga acccccattt ctttggatgg gatatgaact ccatcctgac 
     541 aaatggacag tacagccaat acaactgcca gacaaagata gctggactgt caatgatata 
     601 cagaaactag taggaaaact aaattgggca agtcaaattt atgcaggaat taaagtaaag 
     661 caactatgta aactcctcag aggagccaaa gcactaacag atatagtaac actgactgag 
     721 gaagcagaat tagaattggc agagaacagg gagattctaa ag
//
last modified: Tue May 31 10:56 2022


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