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LOCUS	    EU125938		     762 bp    DNA     linear	VRL 24-SEP-2007
DEFINITION  HIV-1 isolate INN131 from Uganda pol protein (pol) gene, partial
	    cds
ACCESSION   EU125938
VERSION     EU125938.1 GI:157366476
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 762)
            Show all sequences for reference 1
  AUTHORS   Troyer,R.M., Lalonde,M.S., Fraundorf,E., Demers,K.R., Kyeyune,F.,
	    Mugyenyi,P., Syed,A., Whalen,C.C., Bajunirwe,F. and Arts,E.J.
  TITLE     A radiolabeled oligonucleotide ligation assay demonstrates the high
	    frequency of nevirapine resistance mutations in HIV type 1
	    quasispecies of NVP-treated and untreated mother-infant pairs from
	    Uganda.
  JOURNAL   AIDS Res. Hum. Retroviruses. 24(2); 235-50 (2008)
  PUBMED    18284323
REFERENCE   2 (bases 1 to 762)
            Show all sequences for reference 2
  AUTHORS   Troyer,R.M., Lalonde,M.S. and Arts,E.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-AUG-2007) Department of Medicine, Division of
	    Infectious Diseases, Case Western Reserve University, 2109 Adelbert
	    Road, Cleveland, OH 44106, USA
FEATURES             Location/Qualifiers
     source	     1..762
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="INN131"
		     /db_xref="taxon:11676"
		     /country="Uganda"
     gene	     <1..>762
		     /gene="pol"
     CDS	     <1..>762
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ABV45326.1"
		     /db_xref="GI:157366477"
		     /translation="TPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLK
		     KKKSVTVLDVGDAYFSVPLDENFRKYTAFTIPSINNETPGVRYQYNVLPQGWKGSPAI
		     FQSSMAKILEPFRSQNPGIIICQYMDDLYVGSDLEIGQHRIKVEELREHLLRWGFTTP
		     DKKHQKEPPFLWMGYELHPDKWTVQPIQLPNKDSWTVNDIQKLVGKLNWASQIYAGIK
		     VKQLCKLLRGAKALTDIVTLTEEAELELAENREILK"
BASE COUNT	297 a	 129 c	  162 g    174 t
ORIGIN
       1 actccagtat ttgctataaa gaaaaaagat agtactaaat ggagaaaatt agtagatttt 
      61 agagagctca ataaaagaac ccaggacttc tgggaagttc aattaggaat accgcatccc 
     121 gcaggtttaa aaaagaaaaa atcagtaaca gtactagatg tgggggatgc atatttttca 
     181 gttcctttag atgaaaactt taggaaatat actgcattca ccatacctag tataaacaat 
     241 gagacaccag gagtcaggta tcaatacaat gtactcccac aaggatggaa aggatcaccg 
     301 gcaatattcc agagtagcat ggcaaaaatc ttagagccat ttagatcaca gaatccagga 
     361 ataattatct gtcagtacat ggatgacttg tatgtaggat ctgatttaga aataggacag 
     421 catagaataa aagtagagga gttgagagag catctattga ggtggggatt tactacacca 
     481 gacaaaaagc atcagaaaga acctccattt ctttggatgg gatatgaact ccatcctgac 
     541 aaatggacag tacagcctat acagctgcca aacaaagaca gctggactgt caatgatata 
     601 cagaaattag taggaaaact aaattgggcc agccaaattt atgcagggat taaagtaaag 
     661 caactgtgta aactcctcag aggagccaaa gcactaacag atatagtaac actgactgag 
     721 gaagcagaac tagaactagc agagaacagg gagattctaa aa
//
last modified: Tue May 31 10:56 2022


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