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LOCUS	    EU125886		     762 bp    DNA     linear	VRL 24-SEP-2007
DEFINITION  HIV-1 isolate MTU053 from Uganda pol protein (pol) gene, partial
	    cds
ACCESSION   EU125886
VERSION     EU125886.1 GI:157366372
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 762)
            Show all sequences for reference 1
  AUTHORS   Troyer,R.M., Lalonde,M.S., Fraundorf,E., Demers,K.R., Kyeyune,F.,
	    Mugyenyi,P., Syed,A., Whalen,C.C., Bajunirwe,F. and Arts,E.J.
  TITLE     A radiolabeled oligonucleotide ligation assay demonstrates the high
	    frequency of nevirapine resistance mutations in HIV type 1
	    quasispecies of NVP-treated and untreated mother-infant pairs from
	    Uganda.
  JOURNAL   AIDS Res. Hum. Retroviruses. 24(2); 235-50 (2008)
  PUBMED    18284323
REFERENCE   2 (bases 1 to 762)
            Show all sequences for reference 2
  AUTHORS   Troyer,R.M., Lalonde,M.S. and Arts,E.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-AUG-2007) Department of Medicine, Division of
	    Infectious Diseases, Case Western Reserve University, 2109 Adelbert
	    Road, Cleveland, OH 44106, USA
FEATURES             Location/Qualifiers
     source	     1..762
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="MTU053"
		     /db_xref="taxon:11676"
		     /country="Uganda"
     gene	     <1..>762
		     /gene="pol"
     CDS	     <1..>762
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ABV45274.1"
		     /db_xref="GI:157366373"
		     /translation="TPIFAIKKKDNTKWRKLVDFRELNKRTQDFWEIQLGIPHPAGLK
		     KKKSVTVLDVGDAYFSVPLYEDFKKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAI
		     FQSSMTKILEPFRKQNPEMVIYQYMDDLYVGSDLEIGQHRTKIEELREHLLKWGFTTP
		     DKKHQKEPPFLWMGYELHPDKWTVQPIILPEKDSWTVNDIQKLVGKLNWASQIYQGIK
		     VKQLCKCLRGAKALTEVVTLTEEAELELAENREILK"
BASE COUNT	311 a	 124 c	  152 g    175 t
ORIGIN
       1 actccaatat ttgccataaa gaaaaaagac aatactaagt ggagaaaatt agtagatttc 
      61 agagaactta ataagagaac tcaagacttc tgggaaattc aattaggaat accacatcct 
     121 gcagggctaa aaaagaaaaa atcagtaaca gtactggatg tgggtgatgc atatttttca 
     181 gttcccttat atgaagactt taaaaaatat accgcattca ccatacctag cataaacaat 
     241 gagacaccag gaattagata tcagtacaat gtgcttccac aaggatggaa aggatcaccg 
     301 gcaatattcc aaagtagtat gacaaaaatc ttagagcctt ttagaaaaca aaatccagaa 
     361 atggttatct atcaatacat ggatgatttg tatgtaggat ctgacttaga aatagggcag 
     421 catagaacaa aaatagagga attaagggaa cacctattaa agtggggatt taccacacca 
     481 gacaaaaagc atcagaaaga acctccattt ctttggatgg gttatgaact ccatcctgat 
     541 aaatggacag tacagcctat aatactgcca gaaaaggaca gctggactgt caatgatata 
     601 cagaagttag tgggaaaatt aaattgggca agccagattt atcaaggaat taaagtaaaa 
     661 caactatgca aatgccttag gggagccaag gcactgacag aagtagtaac actgacagaa 
     721 gaagcagaat tagaactggc agaaaatagg gaaattctaa aa
//
last modified: Tue May 31 10:56 2022


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