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LOCUS	    EU125875		     762 bp    DNA     linear	VRL 24-SEP-2007
DEFINITION  HIV-1 isolate MTU035 from Uganda pol protein (pol) gene, partial
	    cds
ACCESSION   EU125875
VERSION     EU125875.1 GI:157366350
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 762)
            Show all sequences for reference 1
  AUTHORS   Troyer,R.M., Lalonde,M.S., Fraundorf,E., Demers,K.R., Kyeyune,F.,
	    Mugyenyi,P., Syed,A., Whalen,C.C., Bajunirwe,F. and Arts,E.J.
  TITLE     A radiolabeled oligonucleotide ligation assay demonstrates the high
	    frequency of nevirapine resistance mutations in HIV type 1
	    quasispecies of NVP-treated and untreated mother-infant pairs from
	    Uganda.
  JOURNAL   AIDS Res. Hum. Retroviruses. 24(2); 235-50 (2008)
  PUBMED    18284323
REFERENCE   2 (bases 1 to 762)
            Show all sequences for reference 2
  AUTHORS   Troyer,R.M., Lalonde,M.S. and Arts,E.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-AUG-2007) Department of Medicine, Division of
	    Infectious Diseases, Case Western Reserve University, 2109 Adelbert
	    Road, Cleveland, OH 44106, USA
FEATURES             Location/Qualifiers
     source	     1..762
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="MTU035"
		     /db_xref="taxon:11676"
		     /country="Uganda"
     gene	     <1..>762
		     /gene="pol"
     CDS	     <1..>762
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ABV45263.1"
		     /db_xref="GI:157366351"
		     /translation="TPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLK
		     KKKSVTVLDVGDAYFSIPLDESFRKYTAFTIPSRNNETPGIRYQYNVLPQGWKGSPAI
		     FQSSMTKILEPFRSQNPEIIIYQYMDDLYVGSDLEIGQHRTKIEELRAHLLSWGLTTP
		     DKKHQKEPPFLWMGYELHPDKWTVQPIKLPEKDSWTVNDIQKLVGKLNWASQIYPGIK
		     VRQLCKCLRGAKALTEIVPLTAEAELELAENREILK"
BASE COUNT	300 a	 129 c	  159 g    174 t
ORIGIN
       1 actccagtat ttgctataaa gaaaaaagac agcactaagt ggaggaaatt agtagatttc 
      61 agagagctca ataaaagaac tcaggacttc tgggaagttc aattaggaat accgcatcca 
     121 gcaggtttaa aaaagaaaaa atcagtaaca gtactagatg tgggggacgc atatttctca 
     181 attcctttag atgaaagctt tagaaagtat actgccttca ccatacctag tagaaacaat 
     241 gagacaccag gaatcaggta tcagtacaat gtgcttccac agggatggaa aggatcacca 
     301 gcaatattcc agagtagcat gacaaaaatc ttagagccct ttagatcaca gaatccagaa 
     361 ataattatct atcaatacat ggatgacttg tatgtaggat ctgatttaga aatagggcaa 
     421 catagaacaa aaatagaaga gttgagagct catctgttga gctgggggtt aactacacca 
     481 gacaaaaagc atcagaaaga acccccattt ctttggatgg gttatgaact ccatcctgat 
     541 aaatggacag tacagcctat aaaactgcca gaaaaagaca gctggactgt caatgatata 
     601 caaaaattag taggaaaatt aaattgggca agccagattt atccaggaat taaagtaaga 
     661 caattatgta aatgtcttag aggagctaaa gcactgacag aaatagtgcc actgacagca 
     721 gaggcagaat tagaactggc agaaaacagg gaaattctaa aa
//
last modified: Tue May 31 10:56 2022


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