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LOCUS	    EF472772		     847 bp    DNA     linear	VRL 08-JUL-2007
DEFINITION  HIV-1 clone 51B from USA integrase (pol) gene, partial cds
ACCESSION   EF472772
VERSION     EF472772.1 GI:150381897
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 847)
            Show all sequences for reference 1
  AUTHORS   Lataillade,M., Chiarella,J. and Kozal,M.J.
  TITLE     Natural polymorphism of the HIV-1 integrase gene and mutations
	    associated with integrase inhibitor resistance.
  JOURNAL   Antivir. Ther. (Lond.) 12 (4), 563-70 (2007)
  PUBMED    17668566
REFERENCE   2 (bases 1 to 847)
            Show all sequences for reference 2
  AUTHORS   Lataillade,M., Chiarella,J. and Kozal,M.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-MAR-2007) Infectious Diseases, Yale University School
	    of Medicine, 300 Cedar Street Suite 169, New Haven, CT 06520, USA
FEATURES             Location/Qualifiers
     source	     1..847
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="01-2749"
		     /isolation_source="integrase inhibitor-naive patient"
		     /db_xref="taxon:11676"
		     /clone="51B"
		     /country="USA"
		     /collection_date="2001"
     gene	     <1..847
		     /gene="pol"
     CDS	     <1..847
		     /gene="pol"
		     /codon_start="2"
		     /transl_table="1"
		     /product="integrase"
		     /protein_id="ABR68194.1"
		     /db_xref="GI:150381898"
		     /translation="AXAXHEXYHSYWRAMASDFNLPPVVAKEIVASCDKCQLKGEAIH
		     GQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWP
		     VKTIHTDNGSNFTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRD
		     QAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRV
		     YYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVAS
		     RQDED"
BASE COUNT	325 a	 135 c	  209 g    173 t      5 other
ORIGIN
       1 agcccangca gnacatgaga natatcacag ytattggaga gcaatggcta gtgattttaa 
      61 cctgccmcct gtggtagcaa aagaaatagt agccagctgt gataaatgtc agctaaaagg 
     121 agaagccata catggacaag tagactgcag tccaggaatc tggcagctag attgtacaca 
     181 tttagaagga aaagttatcc tggtagcagt ccatgtagcc agtggatata tagaagcaga 
     241 agttattcca gcagagacag gacaggaaac agcatacttc ctcttaaaat tagcaggaag 
     301 atggccagta aaaacaatac atacagacaa tggcagcaac ttcaccagta caacggttaa 
     361 ggccgcctgt tggtgggcgg ggatcaagca ggaatttggc attccctaca atccccaaag 
     421 tcaaggagta gtagaatcta tgaataaaga attaaagaaa attatagaac aggtaagaga 
     481 tcaggctgaa catcttaaga cagcagtaca aatggcagta ttcatccaca attttaaaag 
     541 aaaagggggg attggggggt acagtgcagg agaaagaata gtagacataa tagcaacaga 
     601 catacaaact aaagaattac aaaaacaaat tacaaaaatt caaaattttc gggtttatta 
     661 cagggacagc agagatccac tttggaaagg accagcaaag cttctctgga aaggtgaagg 
     721 ggcagtagta atacaagata atagtgacat aaaggtagtg ccaagaagaa aagcaaagat 
     781 cattagggat tatggaaaac agatggcagg tgatgattgt gtggcaagta gacaggatga 
     841 ggattag
//
last modified: Tue May 31 10:56 2022


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