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LOCUS EF472772 847 bp DNA linear VRL 08-JUL-2007
DEFINITION HIV-1 clone 51B from USA integrase (pol) gene, partial cds
ACCESSION EF472772
VERSION EF472772.1 GI:150381897
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 847)
Show all sequences for reference 1
AUTHORS Lataillade,M., Chiarella,J. and Kozal,M.J.
TITLE Natural polymorphism of the HIV-1 integrase gene and mutations
associated with integrase inhibitor resistance.
JOURNAL Antivir. Ther. (Lond.) 12 (4), 563-70 (2007)
PUBMED 17668566
REFERENCE 2 (bases 1 to 847)
Show all sequences for reference 2
AUTHORS Lataillade,M., Chiarella,J. and Kozal,M.J.
TITLE Direct Submission
JOURNAL Submitted (06-MAR-2007) Infectious Diseases, Yale University School
of Medicine, 300 Cedar Street Suite 169, New Haven, CT 06520, USA
FEATURES Location/Qualifiers
source 1..847
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="01-2749"
/isolation_source="integrase inhibitor-naive patient"
/db_xref="taxon:11676"
/clone="51B"
/country="USA"
/collection_date="2001"
gene <1..847
/gene="pol"
CDS <1..847
/gene="pol"
/codon_start="2"
/transl_table="1"
/product="integrase"
/protein_id="ABR68194.1"
/db_xref="GI:150381898"
/translation="AXAXHEXYHSYWRAMASDFNLPPVVAKEIVASCDKCQLKGEAIH
GQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWP
VKTIHTDNGSNFTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIEQVRD
QAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRV
YYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVAS
RQDED"
BASE COUNT 325 a 135 c 209 g 173 t 5 other
ORIGIN
1 agcccangca gnacatgaga natatcacag ytattggaga gcaatggcta gtgattttaa
61 cctgccmcct gtggtagcaa aagaaatagt agccagctgt gataaatgtc agctaaaagg
121 agaagccata catggacaag tagactgcag tccaggaatc tggcagctag attgtacaca
181 tttagaagga aaagttatcc tggtagcagt ccatgtagcc agtggatata tagaagcaga
241 agttattcca gcagagacag gacaggaaac agcatacttc ctcttaaaat tagcaggaag
301 atggccagta aaaacaatac atacagacaa tggcagcaac ttcaccagta caacggttaa
361 ggccgcctgt tggtgggcgg ggatcaagca ggaatttggc attccctaca atccccaaag
421 tcaaggagta gtagaatcta tgaataaaga attaaagaaa attatagaac aggtaagaga
481 tcaggctgaa catcttaaga cagcagtaca aatggcagta ttcatccaca attttaaaag
541 aaaagggggg attggggggt acagtgcagg agaaagaata gtagacataa tagcaacaga
601 catacaaact aaagaattac aaaaacaaat tacaaaaatt caaaattttc gggtttatta
661 cagggacagc agagatccac tttggaaagg accagcaaag cttctctgga aaggtgaagg
721 ggcagtagta atacaagata atagtgacat aaaggtagtg ccaagaagaa aagcaaagat
781 cattagggat tatggaaaac agatggcagg tgatgattgt gtggcaagta gacaggatga
841 ggattag
//
last modified: Tue May 31 10:56 2022