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LOCUS	    EF449886		     971 bp    RNA     linear	VRL 13-AUG-2008
DEFINITION  HIV-1 isolate 662077 from Switzerland pol protein (pol) gene,
	    partial cds
ACCESSION   EF449886
VERSION     EF449886.1 GI:134023373
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 971)
            Show all sequences for reference 1
  AUTHORS   von Wyl,V., Yerly,S., Boni,J., Burgisser,P., Klimkait,T.,
	    Battegay,M., Furrer,H., Telenti,A., Hirschel,B., Vernazza,P.L.,
	    Bernasconi,E., Rickenbach,M., Perrin,L., Ledergerber,B. and
	    Gunthard,H.F.
  CONSRTM   for the Swiss HIV Cohort Study
  TITLE     Emergence of HIV-1 drug resistance in previously untreated patients
	    initiating combination antiretroviral treatment: a comparison of
	    different regimen types
  JOURNAL   Arch. Intern. Med. 167 (16), 1782-1790 (2007)
  PUBMED    17846398
REFERENCE   2 (bases 1 to 971)
            Show all sequences for reference 2
  AUTHORS   von Wyl,V., Yerly,S., Boeni,J., Buergisser,P., Klimkait,T.,
	    Battegay,M., Furrer,H., Telenti,A., Hirschel,B., Vernazza,P.L.,
	    Bernasconi,E., Rickenbach,M., Perrin,L., Ledergerber,B. and
	    Guenthard,H.F.
  CONSRTM   Swiss HIV Cohort Study
  TITLE     Direct Submission
  JOURNAL   Submitted (22-FEB-2007) Division of Infectious Diseases and
	    Hospital Epidemiology, University Hospital Zurich, Raemistrasse
	    100, Zurich CH-8091, Switzerland
FEATURES             Location/Qualifiers
     source	     1..971
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="662077"
		     /db_xref="taxon:11676"
		     /country="Switzerland"
		     /collection_date="2001"
     gene	     <1..>971
		     /gene="pol"
     CDS	     <1..>971
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ABO45544.1"
		     /db_xref="GI:134023374"
		     /translation="PQITLWQRPLVTIKIGGQLKEALLDTGADDTVVEEMNLPGRWKP
		     KMIGGIGGFIKVRQYDQIXIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPIS
		     PIXTVPVXLXPGMDGPRVKQWPLTEEKIKALIEICTEMEKEGKISKIGPENPYNTPVF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTXILEPFRKQNPD
		     IVIYQYMDDLYVGSDLEIGQHRAKIENLRQHLLRWGLTTPDKKHQKEP"
BASE COUNT	378 a	 152 c	  197 g    228 t     16 other
ORIGIN
       1 cctcagatca ctctttggca acgacccctc gtcacaataa agataggggg gcaactaaag 
      61 gaagctctat tagatacagg agcagatgat acagtagtag aagaaatgaa tttgccagga 
     121 agatggaagc caaaaatgat agggggaatt ggaggtttta ttaaagtaag acagtatgat 
     181 cagatacmaa tagaaatctg tggrcataaa gctataggta cagtattagt aggacctaca 
     241 cctgtcaaca taattggaag aaatctgttg actcagattg gttgtactyt aaattttccc 
     301 attagtccta ttgamactgt accagtaara ttaaamccag gaatggatgg cccaagagtt 
     361 aaacaatggc cattgacaga agaaaaaata aaagcattaa tagaaatttg tacagaaatg 
     421 gaaaaggaag graaaatttc aaaaattggg cctgaaaatc catacaatac tccagtattt 
     481 gccataaaga aaaaagacag tactaaatgg agaaaattag tagatttcag agaacttaat 
     541 aagagaactc aagacttytg ggaagttcaa ttaggaatac cacatcccgc rgggttaaaa 
     601 aagaaaaaat cagtaactgt attggatgtg ggtgatgcat atttttcagt tcccttagay 
     661 aaagacttca ggaagtatac tgcatttacc atacctagta taaacaatga gacaccaggg 
     721 attagatatc artacaatgt gctrccacag ggatggaaag gatcaccagc aatattccaa 
     781 agtagcatga camraatctt agagcctttt agaaaacaaa atccagacat agtcatctat 
     841 caatacatgg atgatttgta tgtaggmtct gacttagaaa tagggcagca tagagcaaaa 
     901 atagaaaatt tgagacagca tctattgagg tggggactta ccacaccaga caaaaaacat 
     961 cagaargaac c
//
last modified: Tue May 31 10:56 2022


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