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LOCUS	    EF449812		     971 bp    RNA     linear	VRL 13-AUG-2008
DEFINITION  HIV-1 isolate 661753 from Switzerland pol protein (pol) gene,
	    partial cds
ACCESSION   EF449812
VERSION     EF449812.1 GI:134023225
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 971)
            Show all sequences for reference 1
  AUTHORS   von Wyl,V., Yerly,S., Boni,J., Burgisser,P., Klimkait,T.,
	    Battegay,M., Furrer,H., Telenti,A., Hirschel,B., Vernazza,P.L.,
	    Bernasconi,E., Rickenbach,M., Perrin,L., Ledergerber,B. and
	    Gunthard,H.F.
  CONSRTM   for the Swiss HIV Cohort Study
  TITLE     Emergence of HIV-1 drug resistance in previously untreated patients
	    initiating combination antiretroviral treatment: a comparison of
	    different regimen types
  JOURNAL   Arch. Intern. Med. 167 (16), 1782-1790 (2007)
  PUBMED    17846398
REFERENCE   2 (bases 1 to 971)
            Show all sequences for reference 2
  AUTHORS   von Wyl,V., Yerly,S., Boeni,J., Buergisser,P., Klimkait,T.,
	    Battegay,M., Furrer,H., Telenti,A., Hirschel,B., Vernazza,P.L.,
	    Bernasconi,E., Rickenbach,M., Perrin,L., Ledergerber,B. and
	    Guenthard,H.F.
  CONSRTM   Swiss HIV Cohort Study
  TITLE     Direct Submission
  JOURNAL   Submitted (22-FEB-2007) Division of Infectious Diseases and
	    Hospital Epidemiology, University Hospital Zurich, Raemistrasse
	    100, Zurich CH-8091, Switzerland
FEATURES             Location/Qualifiers
     source	     1..971
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="661753"
		     /db_xref="taxon:11676"
		     /country="Switzerland"
		     /collection_date="2002"
     gene	     <1..>971
		     /gene="pol"
     CDS	     <1..>971
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ABO45470.1"
		     /db_xref="GI:134023226"
		     /translation="PQITLWQRPLVTVKIGGQLKEALLDTGADDTVLEDMHLPGKWRP
		     KMIGGIGGFIKVKQYDQVPIEICGHKTIGTVLVGPTPVNIIGRNLLTQLGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTEEKIKALMEICAEMEKEGKISKIGPENPYNTPVF
		     AIKKKDSTKWRKLVDFRELNKKTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LDKXFRKYTAFTIPSXNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFREQNPD
		     IVIYQYMDDLYXGSDLEIGQHRTKIEELRXHLLRWGFTTPDKKHQKEP"
BASE COUNT	376 a	 155 c	  199 g    221 t     20 other
ORIGIN
       1 cctcaratca ctctttggca acgacccctc gtcacagtaa aaataggggg gcarctaaag 
      61 gaagctctat tagatacagg agcagatgat acagtattag aagacatgca tttgccaggr 
     121 aaatggagac caaaaatgat agggggaatt ggaggtttta tcaaagtaaa acagtatgat 
     181 caggtgccca tagaaatctg tggacataaa actataggta cagtattagt aggacctaca 
     241 cctgtcaaca taattggaag aaatctgttg actcagcttg gttgcacttt aaattttccc 
     301 attagtccta ttgaractgt accagtaaaa ttaaagccag gaatggatgg cccaaaagtt 
     361 aaacaatggc cattgacaga agaaaaaata aaagcattaa tggaaatctg tgcagaaatg 
     421 gaaaaggaag gaaaaatttc aaaaattggg cctgaaaatc catacaatac tccagtattt 
     481 gccataaaga aaaargacag tactaaatgg agaaagttag tagatttyag agaacttaat 
     541 aagaaaactc aagacttctg ggaagtccaa ttaggaatac cacatcccgc agggttaaaa 
     601 aagaaaaaat cagtaacagt actggatgtg ggagatgcat ayttttcagt ccctttagat 
     661 aaagamttca ggaagtatac tgcatttacc atacctagta yaaacaatga gacaccaggg 
     721 attagrtatc agtayaaygt rcttccacag ggatggaaag gatcaccagc aatattycaa 
     781 agtagyatga caaaaatctt agagcctttt agagaacaaa atccagacat agttatctat 
     841 caatacatgg atgatttgta trtaggrtct gacttagaaa tagggcagca tagaacaaaa 
     901 atagaggaac tgagagmaca tytgttgagg tgggggttta ccacaccaga caaaaaacay 
     961 cagaaagaac c
//
last modified: Tue May 31 10:56 2022


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