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LOCUS	    EF449777		     971 bp    RNA     linear	VRL 13-AUG-2008
DEFINITION  HIV-1 isolate 4815822 from Switzerland pol protein (pol) gene,
	    partial cds
ACCESSION   EF449777
VERSION     EF449777.1 GI:134023155
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 971)
            Show all sequences for reference 1
  AUTHORS   von Wyl,V., Yerly,S., Boni,J., Burgisser,P., Klimkait,T.,
	    Battegay,M., Furrer,H., Telenti,A., Hirschel,B., Vernazza,P.L.,
	    Bernasconi,E., Rickenbach,M., Perrin,L., Ledergerber,B. and
	    Gunthard,H.F.
  CONSRTM   for the Swiss HIV Cohort Study
  TITLE     Emergence of HIV-1 drug resistance in previously untreated patients
	    initiating combination antiretroviral treatment: a comparison of
	    different regimen types
  JOURNAL   Arch. Intern. Med. 167 (16), 1782-1790 (2007)
  PUBMED    17846398
REFERENCE   2 (bases 1 to 971)
            Show all sequences for reference 2
  AUTHORS   von Wyl,V., Yerly,S., Boeni,J., Buergisser,P., Klimkait,T.,
	    Battegay,M., Furrer,H., Telenti,A., Hirschel,B., Vernazza,P.L.,
	    Bernasconi,E., Rickenbach,M., Perrin,L., Ledergerber,B. and
	    Guenthard,H.F.
  CONSRTM   Swiss HIV Cohort Study
  TITLE     Direct Submission
  JOURNAL   Submitted (22-FEB-2007) Division of Infectious Diseases and
	    Hospital Epidemiology, University Hospital Zurich, Raemistrasse
	    100, Zurich CH-8091, Switzerland
FEATURES             Location/Qualifiers
     source	     1..971
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="4815822"
		     /db_xref="taxon:11676"
		     /country="Switzerland"
		     /collection_date="2001"
     gene	     <1..>971
		     /gene="pol"
     CDS	     <1..>971
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ABO45435.1"
		     /db_xref="GI:134023156"
		     /translation="PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEDMELPGRWKP
		     KXIGGIGGFIKVKQYDQIPIEICGHKAIGTVLVGPTPANIIGRNLLTQLGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILDPFRKQNPD
		     IVIYQYVDDLYVGSDLEIGQHRIKIEELRQHLLRWGFTTPDKKHQKEP"
BASE COUNT	373 a	 158 c	  204 g    228 t      8 other
ORIGIN
       1 cctcagatca ctctttggca acgacccctc gtcacaataa agataggggg gcaactaaag 
      61 gaagctctat tagatacagg agcagatgat acagtattag aagacatgga gttgccaggg 
     121 aggtggaaac caaaawtgat agggggaatt ggaggtttta tcaaagtaaa acagtatgat 
     181 caaataccca tagaaatctg tgggcataaa gctataggta cagtattagt aggacctaca 
     241 cctgccaaca taattggaag aaatctgttg actcaacttg gttgcacttt aaattttccc 
     301 attagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaaagtt 
     361 aaacaatggc cattgacaga agaaaaaata aaagcattag tagaaatwtg tacagaaatg 
     421 gaaaaggaag ggaagatttc aaaaattggg cctgaaaatc catacaatac tccagtattt 
     481 gccataaaga aaaaagacag tactaaatgg agaaaattag tagattttag agaacttaat 
     541 aagagaactc aagacttttg ggaagttcaa ttaggaatac cacatcctgc agggttaaaa 
     601 aagaaaaaat cagtracagt actggatgtg ggtgatgcat atttctcagt tcccttagat 
     661 aaagacttca ggaagtatac tgcatttacc atacctagca taaacaatga gacaccaggg 
     721 attagatatc artacaatgt gctyccacag ggatggaaag gatcaccagc gatattccaa 
     781 tgcagtatga caaaaatctt agatcctttt agaaaacaaa atccagacat agttatctac 
     841 caatacgtgg atgatttgta tgtaggatct gatctrgaaa tagggcagca tagrataaag 
     901 atagaggaac tgagacagca tctkttgagg tgggggttta ctacaccaga caaaaaacat 
     961 cagaaagaac c
//
last modified: Tue May 31 10:56 2022


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