HIV Databases HIV Databases home HIV Databases home
HIV Sequence Database



Download: ENTIRE SEQUENCE SEQUENCE FRAGMENT start end
Format:  
View NCBI entry		Download GenBank file		Graphics View		Download GFF3 File

LOCUS	    EF432704		     895 bp    RNA     linear	VRL 01-OCT-2007
DEFINITION  HIV-1 isolate fj80 from China pol protein (pol) gene, partial cds
ACCESSION   EF432704
VERSION     EF432704.1 GI:151337659
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 895)
            Show all sequences for reference 1
  AUTHORS   Liu,J., Yue,J., Wu,S. and Yan,Y.
  TITLE     Polymorphisms and drug resistance analysis of HIV-1 CRF01_AE
	    strains circulating in Fujian Province, China
  JOURNAL   Arch. Virol. 152 (10), 1799-1805 (2007)
  PUBMED    17619115
REFERENCE   2 (bases 1 to 895)
            Show all sequences for reference 2
  AUTHORS   Liu,J., Yue,J. and Yan,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-FEB-2007) Department of Clinical Laboratory, Shanghai
	    Pulmonary Hospital, NO.507 Zhengmin Road, Shanghai 200433, China
COMMENT     drived from drug naive patient.
FEATURES             Location/Qualifiers
     source	     1..895
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="fj80"
		     /isolation_source="drug naive patient"
		     /db_xref="taxon:11676"
		     /country="China: Fujian Province"
		     /note="subtype: CRF01_AE"
     gene	     <1..>895
		     /gene="pol"
		     /note="HXB2 2253-3347"
     CDS	     <1..>895
		     /gene="pol"
		     /note="protease and 5'' end of reverse transcriptase"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ABS01262.1"
		     /db_xref="GI:151337660"
		     /translation="PQITLWQRPLVTIRIGGQLKEALLDTGADDTVLEDINLPGKWKP
		     KMIGGIGGFIKVRQYDQILIEICGKKAIGTVLVGPTPVNIIGRNMLTQLGCTLNFPIS
		     PIDTVPVTLKPGMDGPKVKQWPLTEEKIKALTEICKEMEEEGKISKIGPENPYNTPVF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LDESFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRIKNPE
		     MVIYQYMDDLYVGSDLEIGQHR"
BASE COUNT	352 a	 136 c	  189 g    218 t
ORIGIN
       1 cctcaaatca ctctttggca acgacccctt gtcacaataa gaataggagg acagctaaaa 
      61 gaagctctat tagatacagg agcagatgat acagtattag aagatataaa tttgccagga 
     121 aaatggaaac caaaaatgat agggggaatt ggaggtttta ttaaggtaag gcaatatgat 
     181 cagatactta tagaaatttg tggaaaaaag gctataggta cagtgttagt aggacccacg 
     241 cctgtcaaca taattggacg aaatatgttg actcagcttg gttgtacttt aaatttccca 
     301 attagtccta ttgacactgt accagtaaca ttaaagccag gaatggatgg accaaaggtt 
     361 aaacaatggc cattgacaga agaaaaaata aaagcattaa cagaaatttg taaagagatg 
     421 gaagaggaag gaaaaatctc aaaaattggg cctgaaaatc catacaatac tccagtattt 
     481 gctataaaga aaaaggacag caccaaatgg aggaaattag tagatttcag agagcttaat 
     541 aaaagaactc aggatttttg ggaagttcaa ttaggaatac cgcatccggc aggtttaaaa 
     601 aagaaaaaat cagtaacagt actagatgtg ggagatgcat atttttcagt tcctttagat 
     661 gaaagcttta gaaagtatac tgcattcacc atacctagta taaataatga gacaccagga 
     721 atcagatatc agtacaatgt gctgccacag ggatggaaag gatcaccagc aatattccag 
     781 agtagcatga caaaaatcct agagcccttt agaataaaaa atccagaaat ggttatttat 
     841 caatacatgg atgacttgta tgtaggatcg gatttagaaa tagggcagca cagaa
//
last modified: Tue May 31 10:56 2022


Questions or comments? Contact us at seq-info@lanl.gov.