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LOCUS EF432704 895 bp RNA linear VRL 01-OCT-2007
DEFINITION HIV-1 isolate fj80 from China pol protein (pol) gene, partial cds
ACCESSION EF432704
VERSION EF432704.1 GI:151337659
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 895)
Show all sequences for reference 1
AUTHORS Liu,J., Yue,J., Wu,S. and Yan,Y.
TITLE Polymorphisms and drug resistance analysis of HIV-1 CRF01_AE
strains circulating in Fujian Province, China
JOURNAL Arch. Virol. 152 (10), 1799-1805 (2007)
PUBMED 17619115
REFERENCE 2 (bases 1 to 895)
Show all sequences for reference 2
AUTHORS Liu,J., Yue,J. and Yan,Y.
TITLE Direct Submission
JOURNAL Submitted (11-FEB-2007) Department of Clinical Laboratory, Shanghai
Pulmonary Hospital, NO.507 Zhengmin Road, Shanghai 200433, China
COMMENT drived from drug naive patient.
FEATURES Location/Qualifiers
source 1..895
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="fj80"
/isolation_source="drug naive patient"
/db_xref="taxon:11676"
/country="China: Fujian Province"
/note="subtype: CRF01_AE"
gene <1..>895
/gene="pol"
/note="HXB2 2253-3347"
CDS <1..>895
/gene="pol"
/note="protease and 5'' end of reverse transcriptase"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="ABS01262.1"
/db_xref="GI:151337660"
/translation="PQITLWQRPLVTIRIGGQLKEALLDTGADDTVLEDINLPGKWKP
KMIGGIGGFIKVRQYDQILIEICGKKAIGTVLVGPTPVNIIGRNMLTQLGCTLNFPIS
PIDTVPVTLKPGMDGPKVKQWPLTEEKIKALTEICKEMEEEGKISKIGPENPYNTPVF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDESFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRIKNPE
MVIYQYMDDLYVGSDLEIGQHR"
BASE COUNT 352 a 136 c 189 g 218 t
ORIGIN
1 cctcaaatca ctctttggca acgacccctt gtcacaataa gaataggagg acagctaaaa
61 gaagctctat tagatacagg agcagatgat acagtattag aagatataaa tttgccagga
121 aaatggaaac caaaaatgat agggggaatt ggaggtttta ttaaggtaag gcaatatgat
181 cagatactta tagaaatttg tggaaaaaag gctataggta cagtgttagt aggacccacg
241 cctgtcaaca taattggacg aaatatgttg actcagcttg gttgtacttt aaatttccca
301 attagtccta ttgacactgt accagtaaca ttaaagccag gaatggatgg accaaaggtt
361 aaacaatggc cattgacaga agaaaaaata aaagcattaa cagaaatttg taaagagatg
421 gaagaggaag gaaaaatctc aaaaattggg cctgaaaatc catacaatac tccagtattt
481 gctataaaga aaaaggacag caccaaatgg aggaaattag tagatttcag agagcttaat
541 aaaagaactc aggatttttg ggaagttcaa ttaggaatac cgcatccggc aggtttaaaa
601 aagaaaaaat cagtaacagt actagatgtg ggagatgcat atttttcagt tcctttagat
661 gaaagcttta gaaagtatac tgcattcacc atacctagta taaataatga gacaccagga
721 atcagatatc agtacaatgt gctgccacag ggatggaaag gatcaccagc aatattccag
781 agtagcatga caaaaatcct agagcccttt agaataaaaa atccagaaat ggttatttat
841 caatacatgg atgacttgta tgtaggatcg gatttagaaa tagggcagca cagaa
//
last modified: Tue May 31 10:56 2022