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LOCUS EF193888 1129 bp RNA linear VRL 02-MAY-2007
DEFINITION HIV-1 isolate CH5 from Chile pol protein (pol) gene, partial cds
ACCESSION EF193888
VERSION EF193888.1 GI:145982385
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1129)
Show all sequences for reference 1
AUTHORS Rios,M., Delgado,E., Perez-Alvarez,L., Fernandez,J., Galvez,P., de
Parga,E.V., Yung,V., Thomson,M.M. and Najera,R.
TITLE Antiretroviral drug resistance and phylogenetic diversity of HIV-1
in Chile
JOURNAL J. Med. Virol. 79 (6), 647-656 (2007)
PUBMED 17457921
REFERENCE 2 (bases 1 to 1129)
Show all sequences for reference 2
AUTHORS Rios,M., Delgado,E., Perez-Alvarez,L., Fernandez,J., Galvez,P.,
Vazquez de Parga,E., Yung,V., Thomson,M. and Najera,R.
TITLE Direct Submission
JOURNAL Submitted (21-DEC-2006) Patogenia Viral, Instituto de Salud Carlos
III, Ctra Majadahonda a Pozuelo, km 2, Majadahonda, Madrid 28220,
Spain
FEATURES Location/Qualifiers
source 1..1129
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="CH5"
/db_xref="taxon:11676"
/country="Chile"
gene <1..>1129
/gene="pol"
CDS <1..>1129
/gene="pol"
/note="PR-RT"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="ABQ00967.1"
/db_xref="GI:145982386"
/translation="PQITLWERPLVTIKIGGQLKEALLDTGADDTVLEDMNLPGRWKP
KIIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNVIGRNLMTQIGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTELEKEGKISKIGPENPYNTPVF
AIKKKNSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKNKSVTVLDVGDAYFSVP
LDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPE
IVIYQYVDDLYVGSDLEIGQHRTKIEELRQHLLAWGFYTPDQKHQKEPPFLWMGYELH
PDKWTVQPIKLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVK"
BASE COUNT 434 a 184 c 242 g 269 t
ORIGIN
1 cctcaaatca ctctttggga acgacccctc gtcacaataa agataggggg gcaactaaag
61 gaagctctat tagatacagg agcagatgat acagtattag aagacatgaa tttgccagga
121 agatggaaac caaaaataat agggggaatt ggaggtttta tcaaagtaag acagtatgat
181 cagataccca tagaaatttg cgggcataaa gctataggta cagtattaat aggacctaca
241 cctgtcaacg taattggaag aaatctgatg actcaaattg gctgtacttt aaattttccc
301 attagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaaggtt
361 aaacaatggc cattgacaga agaaaaaata aaagcattag tagaaatttg tacagaactg
421 gaaaaggaag gaaaaatttc aaaaattggg cctgaaaatc catacaatac tccagtattt
481 gccataaaga agaagaacag tactaaatgg agaaaattag tagacttcag agaacttaat
541 aagagaactc aagacttctg ggaggttcaa ttaggaatac cacatcctgc agggttaaaa
601 aagaataaat cagtgacagt gctggatgtg ggtgatgcat atttttcagt tcccttagat
661 gaagacttca ggaagtatac tgcatttacc atacctagta taaacaatga gactccaggg
721 attaggtatc agtacaatgt gcttccacag ggatggaaag gatcaccagc aatattccaa
781 agtagcatga caaaaatctt agagcctttt agaaaacaaa atccagaaat agttatctat
841 caatacgtgg atgatttgta tgtaggatct gacttagaaa tagggcagca tagaacaaaa
901 atagaggaac taagacaaca tctgttggcg tggggatttt acacaccaga ccaaaaacat
961 cagaaagaac ctccattcct ttggatgggt tatgaactcc atcctgataa atggacagta
1021 cagcctataa agctgccaga aaaagacagc tggactgtca atgacataca gaagttagtg
1081 ggaaaattga attgggcaag tcagatttat gcagggatta aagtaaagc
//
last modified: Tue May 31 10:56 2022