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LOCUS	    EF193888		    1129 bp    RNA     linear	VRL 02-MAY-2007
DEFINITION  HIV-1 isolate CH5 from Chile pol protein (pol) gene, partial cds
ACCESSION   EF193888
VERSION     EF193888.1 GI:145982385
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1129)
            Show all sequences for reference 1
  AUTHORS   Rios,M., Delgado,E., Perez-Alvarez,L., Fernandez,J., Galvez,P., de
	    Parga,E.V., Yung,V., Thomson,M.M. and Najera,R.
  TITLE     Antiretroviral drug resistance and phylogenetic diversity of HIV-1
	    in Chile
  JOURNAL   J. Med. Virol. 79 (6), 647-656 (2007)
  PUBMED    17457921
REFERENCE   2 (bases 1 to 1129)
            Show all sequences for reference 2
  AUTHORS   Rios,M., Delgado,E., Perez-Alvarez,L., Fernandez,J., Galvez,P.,
	    Vazquez de Parga,E., Yung,V., Thomson,M. and Najera,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-DEC-2006) Patogenia Viral, Instituto de Salud Carlos
	    III, Ctra Majadahonda a Pozuelo, km 2, Majadahonda, Madrid 28220,
	    Spain
FEATURES             Location/Qualifiers
     source	     1..1129
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="CH5"
		     /db_xref="taxon:11676"
		     /country="Chile"
     gene	     <1..>1129
		     /gene="pol"
     CDS	     <1..>1129
		     /gene="pol"
		     /note="PR-RT"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ABQ00967.1"
		     /db_xref="GI:145982386"
		     /translation="PQITLWERPLVTIKIGGQLKEALLDTGADDTVLEDMNLPGRWKP
		     KIIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNVIGRNLMTQIGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTELEKEGKISKIGPENPYNTPVF
		     AIKKKNSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKNKSVTVLDVGDAYFSVP
		     LDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPE
		     IVIYQYVDDLYVGSDLEIGQHRTKIEELRQHLLAWGFYTPDQKHQKEPPFLWMGYELH
		     PDKWTVQPIKLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVK"
BASE COUNT	434 a	 184 c	  242 g    269 t
ORIGIN
       1 cctcaaatca ctctttggga acgacccctc gtcacaataa agataggggg gcaactaaag 
      61 gaagctctat tagatacagg agcagatgat acagtattag aagacatgaa tttgccagga 
     121 agatggaaac caaaaataat agggggaatt ggaggtttta tcaaagtaag acagtatgat 
     181 cagataccca tagaaatttg cgggcataaa gctataggta cagtattaat aggacctaca 
     241 cctgtcaacg taattggaag aaatctgatg actcaaattg gctgtacttt aaattttccc 
     301 attagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaaggtt 
     361 aaacaatggc cattgacaga agaaaaaata aaagcattag tagaaatttg tacagaactg 
     421 gaaaaggaag gaaaaatttc aaaaattggg cctgaaaatc catacaatac tccagtattt 
     481 gccataaaga agaagaacag tactaaatgg agaaaattag tagacttcag agaacttaat 
     541 aagagaactc aagacttctg ggaggttcaa ttaggaatac cacatcctgc agggttaaaa 
     601 aagaataaat cagtgacagt gctggatgtg ggtgatgcat atttttcagt tcccttagat 
     661 gaagacttca ggaagtatac tgcatttacc atacctagta taaacaatga gactccaggg 
     721 attaggtatc agtacaatgt gcttccacag ggatggaaag gatcaccagc aatattccaa 
     781 agtagcatga caaaaatctt agagcctttt agaaaacaaa atccagaaat agttatctat 
     841 caatacgtgg atgatttgta tgtaggatct gacttagaaa tagggcagca tagaacaaaa 
     901 atagaggaac taagacaaca tctgttggcg tggggatttt acacaccaga ccaaaaacat 
     961 cagaaagaac ctccattcct ttggatgggt tatgaactcc atcctgataa atggacagta 
    1021 cagcctataa agctgccaga aaaagacagc tggactgtca atgacataca gaagttagtg 
    1081 ggaaaattga attgggcaag tcagatttat gcagggatta aagtaaagc
//
last modified: Tue May 31 10:56 2022


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