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LOCUS	    EF066826		     657 bp    DNA     linear	VRL 07-MAY-2007
DEFINITION  HIV-1 clone 4_v1_1A_1 from USA reverse transcriptase (pol) gene,
	    partial cds
ACCESSION   EF066826
VERSION     EF066826.1 GI:126035780
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 657)
            Show all sequences for reference 1
  AUTHORS   Persaud,D., Palumbo,P., Ziemniak,C., Chen,J., Ray,S.C., Hughes,M.,
	    Havens,P., Purswani,M., Gaur,A.H. and Chadwick,E.G.
  CONSRTM   Pediatric AIDS Clinical Trials Group P1030 Team
  TITLE     Early Archiving and Predominance of Nonnucleoside Reverse
	    Transcriptase Inhibitor-Resistant HIV-1 among Recently Infected
	    Infants Born in the United States
  JOURNAL   J. Infect. Dis. 195 (10), 1402-1410 (2007)
  PUBMED    17436219
REFERENCE   2 (bases 1 to 657)
            Show all sequences for reference 2
  AUTHORS   Persaud,D., Palumbo,P., Ziemniak,C., Chen,J., Ray,S.C., Havens,P.,
	    Purswani,M., Gaur,A.H. and Chadwick,E.G.
  CONSRTM   Pediatric AIDS Clinical Trials Group P1030 Team
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2006) Pediatrics, Johns Hopkins University School
	    of Medicine, 600 N. Wolfe Street, Baltimore, MD 21287, USA
FEATURES             Location/Qualifiers
     source	     1..657
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="4"
		     /isolation_source="resting CD4 cells, time point 1"
		     /db_xref="taxon:11676"
		     /clone="4_v1_1A_1"
		     /country="USA"
		     /note="PACTG trial 1030"
     gene	     <1..>657
		     /gene="pol"
     CDS	     <1..>657
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="reverse transcriptase"
		     /protein_id="ABN71752.1"
		     /db_xref="GI:126035781"
		     /translation="GPRVKQWPLTGEKIKALTEICTEMEKEGKISKIGPENPYNTPVF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LDENFRKYTAFTIPSINNETPGVRYQYNVLPQGWKGSPAIFQSSMTKILEPFKKQNPD
		     LVIYQYMDDLYVASDLEIGQHRAKIEELRQHLLKWGLTTPDKKHQKEPPFLWMGYELH
		     P"
BASE COUNT	264 a	 109 c	  131 g    153 t
ORIGIN
       1 ggcccaagag ttaagcaatg gccattgaca ggagaaaaaa taaaagcatt aacagagatt 
      61 tgtacagaaa tggaaaagga aggaaaaatt tcaaaaattg ggcctgaaaa cccatacaat 
     121 actccagtat ttgccataaa gaaaaaagac agtactaaat ggagaaaatt agtagatttc 
     181 agagaactta ataaaagaac tcaagacttc tgggaagtac aattaggaat accacatcct 
     241 gcagggctga agaagaaaaa atcagtaaca gtgctagatg tgggtgatgc atatttttca 
     301 gttcccttag atgaaaactt caggaaatat actgcattta ccatacctag tataaacaat 
     361 gagacaccag gggtgagata tcagtacaat gtgcttccac agggatggaa aggatcacca 
     421 gcaatattcc aaagtagcat gacaaaaatc ttagagcctt ttaaaaaaca aaatccagac 
     481 ttagttatct atcaatacat ggatgatttg tatgtagcat ctgatttaga aataggacag 
     541 catagagcaa aaatagagga attaagacaa catctgttga agtggggact taccacacca 
     601 gacaaaaagc atcagaagga acctccattt ctttggatgg gttatgaact ccatcct
//
last modified: Tue May 31 10:56 2022


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