HIV Databases HIV Databases home HIV Databases home
HIV Sequence Database



Download: ENTIRE SEQUENCE SEQUENCE FRAGMENT start end
Format:  
View NCBI entry		Download GenBank file		Graphics View		Download GFF3 File

LOCUS	    EF066749		     657 bp    DNA     linear	VRL 07-MAY-2007
DEFINITION  HIV-1 clone 1_v1_1A_4 from USA nonfunctional reverse transcripase
	    (pol) gene, partial sequence
ACCESSION   EF066749
VERSION     EF066749.1 GI:126035691
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 657)
            Show all sequences for reference 1
  AUTHORS   Persaud,D., Palumbo,P., Ziemniak,C., Chen,J., Ray,S.C., Hughes,M.,
	    Havens,P., Purswani,M., Gaur,A.H. and Chadwick,E.G.
  CONSRTM   Pediatric AIDS Clinical Trials Group P1030 Team
  TITLE     Early Archiving and Predominance of Nonnucleoside Reverse
	    Transcriptase Inhibitor-Resistant HIV-1 among Recently Infected
	    Infants Born in the United States
  JOURNAL   J. Infect. Dis. 195 (10), 1402-1410 (2007)
  PUBMED    17436219
REFERENCE   2 (bases 1 to 657)
            Show all sequences for reference 2
  AUTHORS   Persaud,D., Palumbo,P., Ziemniak,C., Chen,J., Ray,S.C., Havens,P.,
	    Purswani,M., Gaur,A.H. and Chadwick,E.G.
  CONSRTM   Pediatric AIDS Clinical Trials Group P1030 Team
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2006) Pediatrics, Johns Hopkins University School
	    of Medicine, 600 N. Wolfe Street, Baltimore, MD 21287, USA
FEATURES             Location/Qualifiers
     source	     1..657
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="1"
		     /isolation_source="resting CD4 cells, time point 1"
		     /db_xref="taxon:11676"
		     /clone="1_v1_1A_4"
		     /country="USA"
		     /note="PACTG trial 1030"
     gene	     <1..>657
		     /gene="pol"
     misc_feature    <1..>657
		     /gene="pol"
		     /note="nonfunctional reverse transcripase due to internal
		     stop codon"
BASE COUNT	274 a	 112 c	  122 g    149 t
ORIGIN
       1 ggcccaaaag ttaaacaatg gccattgaca gaagaaaaaa taaaagcact aatagaaatt 
      61 tgttcagaaa tgaaaaagga aggaaaaatt tcaaaaattg ggcctgaaaa tccatacaat 
     121 actccagtat ttgccataaa gaaaaaagac agtactaaat gaaaaaaatt agtagatttt 
     181 agggaactta ataagagaac ccaagacttc tgagaagttc aattaggaat accacatcct 
     241 gcagggttaa aaaacaaaaa atcagtaaca gtactggatg tgggtgatgc atatttttca 
     301 gttcccttag ataaagactt caggaagtat acagcattta ccatacctag tataaacaat 
     361 gagacaccag gaactagata tcagtacaat gtgctcccac agggatggaa agaatcacca 
     421 gcaatattcc aaagtagcat gacaaaaatc ttagagcctt ttagaaaaaa gaacccagac 
     481 atagtcatct atcaatacgt ggatgatttg tatataggat ctaacttaga gataggacag 
     541 catagaacaa aaatagagga actgagagga catctcttaa agtgggggtt taccacacca 
     601 gacaaaaaac atcagaaaga acctccattc ctttggatgg ggtatgaact ccatcct
//
last modified: Tue May 31 10:56 2022


Questions or comments? Contact us at seq-info@lanl.gov.