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LOCUS	    EF042798		    1116 bp    RNA     linear	VRL 09-APR-2007
DEFINITION  HIV-1 isolate CT01-1201 from USA pol protein (pol) gene, partial
	    cds
ACCESSION   EF042798
VERSION     EF042798.1 GI:125380313
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1116)
            Show all sequences for reference 1
  AUTHORS   Blick,G., Kagan,R.M., Coakley,E., Petropoulos,C., Maroldo,L.,
	    Greiger-Zanlungo,P., Gretz,S. and Garton,T.
  TITLE     The Probable Source of Both the Primary Multidrug-Resistant (MDR)
	    HIV-1 Strain Found in a Patient with Rapid Progression to AIDS and
	    a Second Recombinant MDR Strain Found in a Chronically
	    HIV-1-Infected Patient
  JOURNAL   J. Infect. Dis. 195 (9), 1250-1259 (2007)
  PUBMED    17396993
REFERENCE   2 (bases 1 to 1116)
            Show all sequences for reference 2
  AUTHORS   Kagan,R.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-OCT-2006) Infectious Diseases, Quest Diagnostics,
	    33608 Ortega Hwy, San Juan Capistrano, CA 92675, USA
FEATURES             Location/Qualifiers
     source	     1..1116
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="CT01-1201"
		     /db_xref="taxon:11676"
		     /country="USA"
     gene	     <1..>1116
		     /gene="pol"
     CDS	     <1..>1116
		     /gene="pol"
		     /note="protease and reverse transcriptase"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ABN41206.1"
		     /db_xref="GI:125380314"
		     /translation="PQITLWQRPIVTIKIGGQLKEALLDTGADDTVFQEMSLPGRWKP
		     KIIGGIGGFMKVRQYDQVPLEVCGHKVISTVVIGPTPVNVIGRNVMTQLGCTLNFPIS
		     PIEPVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTELEEEGKISRIGPENPYNTPVF
		     AIKKKNSTKWRKLVDFRELNKRTQDFWEVQLGIPHPSGLEKKKSVTVLDVGDAYFSIP
		     LDKEFRKYTAFTIPSVNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPE
		     MVIIQYMDDLYVGSDLEIGQHRTKIEELRQHLWKWGFYTPDKKHQKEPPFLWMGYELH
		     PDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPG"
BASE COUNT	428 a	 177 c	  241 g    268 t      2 other
ORIGIN
       1 cctcagatca ctctttggca acgacccatc gtcacaataa agataggggg gcagctaaag 
      61 gaagctctat tagatacagg agcagatgat acagtattcc aagaaatgag tttgccagga 
     121 agatggaaac caaaaataat agggggaatt ggaggtttta tgaaagtaag acagtatgat 
     181 caggtacccc tagaagtctg tggacataaa gttataagta cagtagtaat aggacctaca 
     241 ccagtcaacg taattggaag aaatgtgatg actcagcttg gttgcacgtt aaattttccc 
     301 attagtccta ttgaacctgt accagtaaaa ttaaagccag gaatggatgg cccaaaagtt 
     361 aaacaatggc cattgacaga agaaaaaata aaagcattag tagaaatttg tacagaattg 
     421 gaagaggaag ggaaaatttc aagaattggg cctgaaaatc catacaatac tccagtattt 
     481 gccataaaga aaaagaacag tactaaatgg agaaaattag tagatttcag agaactcaat 
     541 aagagaactc aagatttctg ggaagttcaa ttaggaatac cacatccctc agggttagaa 
     601 aagaaaaaat cagtaacagt actggatgtg ggtgatgcat atttttcaat tcctttagat 
     661 aaagaattca gaaagtatac tgcatttacc atacctagtg taaataatga gacaccaggg 
     721 attagrtatc agtacaatgt gcttccacag ggatggaaag gatcaccagc aatattccag 
     781 agtagcatga caaaaatctt agagcctttt agaaaacaaa atccagaaat ggttatcatt 
     841 caatacatgg atgatttgta tgtaggatct gacttagaaa taggacaaca tagaactaaa 
     901 atagaggaac tgagacaaca tttgtggaag tgggggtttt acacaccaga caaaaaacat 
     961 cagaaagaac ctccatttct ttggatgggt tatgaactcc atcctgataa atggacagta 
    1021 cagcctatag tgctgccaga aaaagacagc tggactgtca atgacataca gaagttagtg 
    1081 ggaaaattga attgggcaag tcaaatttay ccaggg
//
last modified: Tue May 31 10:56 2022


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