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LOCUS EF042798 1116 bp RNA linear VRL 09-APR-2007
DEFINITION HIV-1 isolate CT01-1201 from USA pol protein (pol) gene, partial
cds
ACCESSION EF042798
VERSION EF042798.1 GI:125380313
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1116)
Show all sequences for reference 1
AUTHORS Blick,G., Kagan,R.M., Coakley,E., Petropoulos,C., Maroldo,L.,
Greiger-Zanlungo,P., Gretz,S. and Garton,T.
TITLE The Probable Source of Both the Primary Multidrug-Resistant (MDR)
HIV-1 Strain Found in a Patient with Rapid Progression to AIDS and
a Second Recombinant MDR Strain Found in a Chronically
HIV-1-Infected Patient
JOURNAL J. Infect. Dis. 195 (9), 1250-1259 (2007)
PUBMED 17396993
REFERENCE 2 (bases 1 to 1116)
Show all sequences for reference 2
AUTHORS Kagan,R.M.
TITLE Direct Submission
JOURNAL Submitted (04-OCT-2006) Infectious Diseases, Quest Diagnostics,
33608 Ortega Hwy, San Juan Capistrano, CA 92675, USA
FEATURES Location/Qualifiers
source 1..1116
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="CT01-1201"
/db_xref="taxon:11676"
/country="USA"
gene <1..>1116
/gene="pol"
CDS <1..>1116
/gene="pol"
/note="protease and reverse transcriptase"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="ABN41206.1"
/db_xref="GI:125380314"
/translation="PQITLWQRPIVTIKIGGQLKEALLDTGADDTVFQEMSLPGRWKP
KIIGGIGGFMKVRQYDQVPLEVCGHKVISTVVIGPTPVNVIGRNVMTQLGCTLNFPIS
PIEPVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTELEEEGKISRIGPENPYNTPVF
AIKKKNSTKWRKLVDFRELNKRTQDFWEVQLGIPHPSGLEKKKSVTVLDVGDAYFSIP
LDKEFRKYTAFTIPSVNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPE
MVIIQYMDDLYVGSDLEIGQHRTKIEELRQHLWKWGFYTPDKKHQKEPPFLWMGYELH
PDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPG"
BASE COUNT 428 a 177 c 241 g 268 t 2 other
ORIGIN
1 cctcagatca ctctttggca acgacccatc gtcacaataa agataggggg gcagctaaag
61 gaagctctat tagatacagg agcagatgat acagtattcc aagaaatgag tttgccagga
121 agatggaaac caaaaataat agggggaatt ggaggtttta tgaaagtaag acagtatgat
181 caggtacccc tagaagtctg tggacataaa gttataagta cagtagtaat aggacctaca
241 ccagtcaacg taattggaag aaatgtgatg actcagcttg gttgcacgtt aaattttccc
301 attagtccta ttgaacctgt accagtaaaa ttaaagccag gaatggatgg cccaaaagtt
361 aaacaatggc cattgacaga agaaaaaata aaagcattag tagaaatttg tacagaattg
421 gaagaggaag ggaaaatttc aagaattggg cctgaaaatc catacaatac tccagtattt
481 gccataaaga aaaagaacag tactaaatgg agaaaattag tagatttcag agaactcaat
541 aagagaactc aagatttctg ggaagttcaa ttaggaatac cacatccctc agggttagaa
601 aagaaaaaat cagtaacagt actggatgtg ggtgatgcat atttttcaat tcctttagat
661 aaagaattca gaaagtatac tgcatttacc atacctagtg taaataatga gacaccaggg
721 attagrtatc agtacaatgt gcttccacag ggatggaaag gatcaccagc aatattccag
781 agtagcatga caaaaatctt agagcctttt agaaaacaaa atccagaaat ggttatcatt
841 caatacatgg atgatttgta tgtaggatct gacttagaaa taggacaaca tagaactaaa
901 atagaggaac tgagacaaca tttgtggaag tgggggtttt acacaccaga caaaaaacat
961 cagaaagaac ctccatttct ttggatgggt tatgaactcc atcctgataa atggacagta
1021 cagcctatag tgctgccaga aaaagacagc tggactgtca atgacataca gaagttagtg
1081 ggaaaattga attgggcaag tcaaatttay ccaggg
//
last modified: Tue May 31 10:56 2022