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LOCUS DQ832135 1212 bp DNA linear VRL 08-NOV-2006
DEFINITION HIV-1 isolate 05-132884 from USA pol protein (pol) gene, partial
cds
ACCESSION DQ832135
VERSION DQ832135.1 GI:111052963
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1212)
Show all sequences for reference 1
AUTHORS Viani,R.M., Peralta,L., Aldrovandi,G., Kapogiannis,B.G.,
Mitchell,R., Spector,S.A., Lie,Y.S., Weidler,J.M., Bates,M.P.,
Liu,N. and Wilson,C.M.
CONSRTM Adolescent Medicine Trials Network for HIV/AIDS Interventions
TITLE Prevalence of Primary HIV-1 Drug Resistance among Recently Infected
Adolescents: A Multicenter Adolescent Medicine Trials Network for
HIV/AIDS Interventions Study
JOURNAL J. Infect. Dis. 194 (11), 1505-1509 (2006)
PUBMED 17083034
REFERENCE 2 (bases 1 to 1212)
Show all sequences for reference 2
AUTHORS Wilson,C.M., Viani,R.M., Aldrovandi,G., Kapogiannis,B.G.,
Mitchell,R., Spector,S.A., Lie,Y.S., Weidler,J.M., Bates,M.P. and
Liu,N.
CONSRTM Adolescent Medicine Network for HIV/AIDS Interventions (ATN)
TITLE Direct Submission
JOURNAL Submitted (29-JUN-2006) Pediatrics and Medicine, University of
Alabama at Birmingham, 845 19th South BBRB 220A, Birmingahm, AL
35294, USA
FEATURES Location/Qualifiers
source 1..1212
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="05-132884"
/isolation_source="patient with recently acquired HIV
infection (<180 days)"
/db_xref="taxon:11676"
/country="USA"
gene <1..>1212
/gene="pol"
CDS <1..>1212
/gene="pol"
/note="RT-PR"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="ABH03742.1"
/db_xref="GI:111052964"
/translation="PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGKWKP
KMIGGIGGFIKVRQYDQILIEICGHKAIGTVLXGPTPVNIIGRNLLTQLGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILDPFRKQNPD
IVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGFTTPDKKHQKEPPFLWMGYELH
PDKWTVQPIKLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGAKALTEVV
PLTEEAELELAE"
BASE COUNT 476 a 194 c 252 g 285 t 5 other
ORIGIN
1 cctcaaatca ctctttggca acgacccctc gtcacaataa agataggggg gcaactaaag
61 gaagctctat tagatacagg agcagatgat acagtattag aagaaatgaa tttgccagga
121 aartggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acaatatgat
181 cagatactca tagaaatctg tggacataaa gctataggta cagtattart aggacccaca
241 cctgtcaaca tyattggaag aaatctgttg actcagcttg gwtgtacttt aaattttcct
301 attagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaaagtt
361 aaacaatggc cattgacaga agaaaaaata aaagcattag tagaaatttg tacagaaatg
421 gaaaaggaag ggaaaatttc aaagattggg cctgaaaatc catacaatac tccagtattt
481 gccataaaga aaaaagacag tactaaatgg agaaaattag tagatttcag agaacttaat
541 aagagaactc aagacttctg ggaagttcaa ttaggaatac cacatcctgc agggttaaaa
601 aagaaaaaat cagtaacagt actggatgtg ggggatgcat acttctcagt tcccttagat
661 aaagacttca gaaagtatac tgcatttacc atacctagta taaataatga gacaccaggg
721 attagatatc agtataatgt gcttccacag ggatggaaag gatcaccagc aatattccaa
781 agtagtatga caaagattct agatcctttt agaaaacaaa atccagacat agttatctat
841 caatacatgg atgatttgta tgtaggatct gacttagaaa taggacaaca tagaacaaaa
901 atagaggagc tgagacaaca tctgttgagg tgggggttta ccacaccaga caaaaaacat
961 cagaaagaac ctccattcct ttggatgggt tatgaactcc atcctgataa atggacagta
1021 caacctataa agctgccaga aaaggatagc tggactgtca atgatataca gaagttagtg
1081 ggaaaattaa attgggcaag tcagatttat gcagggatta aagtaaaaca attatgtaaa
1141 ctccttaggg gggccaaagc actaacagaa gtagtaccac taacagaaga agcggagcta
1201 gaactrgcag aa
//
last modified: Tue May 31 10:56 2022