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LOCUS	    DQ832117		    1212 bp    DNA     linear	VRL 08-NOV-2006
DEFINITION  HIV-1 isolate 05-132862 from USA pol protein (pol) gene, partial
	    cds
ACCESSION   DQ832117
VERSION     DQ832117.1 GI:111052927
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1212)
            Show all sequences for reference 1
  AUTHORS   Viani,R.M., Peralta,L., Aldrovandi,G., Kapogiannis,B.G.,
	    Mitchell,R., Spector,S.A., Lie,Y.S., Weidler,J.M., Bates,M.P.,
	    Liu,N. and Wilson,C.M.
  CONSRTM   Adolescent Medicine Trials Network for HIV/AIDS Interventions
  TITLE     Prevalence of Primary HIV-1 Drug Resistance among Recently Infected
	    Adolescents: A Multicenter Adolescent Medicine Trials Network for
	    HIV/AIDS Interventions Study
  JOURNAL   J. Infect. Dis. 194 (11), 1505-1509 (2006)
  PUBMED    17083034
REFERENCE   2 (bases 1 to 1212)
            Show all sequences for reference 2
  AUTHORS   Wilson,C.M., Viani,R.M., Aldrovandi,G., Kapogiannis,B.G.,
	    Mitchell,R., Spector,S.A., Lie,Y.S., Weidler,J.M., Bates,M.P. and
	    Liu,N.
  CONSRTM   Adolescent Medicine Network for HIV/AIDS Interventions (ATN)
  TITLE     Direct Submission
  JOURNAL   Submitted (29-JUN-2006) Pediatrics and Medicine, University of
	    Alabama at Birmingham, 845 19th South BBRB 220A, Birmingahm, AL
	    35294, USA
FEATURES             Location/Qualifiers
     source	     1..1212
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="05-132862"
		     /isolation_source="patient with recently acquired HIV
		     infection (<180 days)"
		     /db_xref="taxon:11676"
		     /country="USA"
     gene	     <1..>1212
		     /gene="pol"
     CDS	     <1..>1212
		     /gene="pol"
		     /note="RT-PR"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ABH03724.1"
		     /db_xref="GI:111052928"
		     /translation="PQITLWQRPVVTIKVGGQIKEALLDTGADDTVLEDMDLPGRWKP
		     KMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQLGCTLNFPIS
		     SIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LDKEFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILEPFREXNPD
		     LXIYQYMDDLYVGSDLEIGQHRTKIEELRAHLLKWGFTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQTIVLPEKDSWTVNDIQKLVGKLNWASQIYSGIKXXQLCKLLRGAKALTEVI
		     PLTAEAEMELAE"
BASE COUNT	464 a	 191 c	  253 g    285 t     19 other
ORIGIN
       1 cctcaaatca ctctttggca acgacccgtt gtcacaataa aggtaggggg gcaaataaag 
      61 gaagctctat tagatacagg agcagatgat acagtrttag aagacatgga tttaccagga 
     121 agatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acagtatgat 
     181 cagatactca tagaaatttg tggacataaa gctataggta cagtgttagt aggacctaca 
     241 cctgtcaaca taattggaag aaatctgttg actcagcttg gttgcacttt aaatttcccc 
     301 attagttcta ttgaaactgt accagtraaa ttaaagccag gaatggatgg cccaaaagty 
     361 aarcaatggc cattgacaga agaaaaaata aaagcattag tagaaatttg tacagaratg 
     421 gaaaaggaag gaaaaatttc aaaaattgga cctgaaaatc catacaatac accagtattt 
     481 gctataaaaa agaaagacag tacaaaatgg agaaaattag tagattttag agaacttaat 
     541 aagagaacyc aagacttctg ggaagttcaa ttaggaatac cacatcctgc agggttaaaa 
     601 aagaaaaaat cagtaacagt attagatgtg ggtgatgcat atttttcagt tcccttggac 
     661 aargaattca graagtatac tgcatttact atacctagta caaacaatga gacaccaggg 
     721 attagatatc artacaatgt gcttccgcag ggatggaaag gatcaccagc aatattccaa 
     781 tgtagtatga caaaaatctt agagccyttt agagagamaa atccagacct arttatctat 
     841 caatacatgg atgatttgta tgtaggatct gacttagaaa taggacagca tagracaaaa 
     901 atagaggaac tgagagcaca tctgttgaar tggggattta ccaccccaga caaaaaacat 
     961 cagaaagaac ctccattcct ttggatgggt tatgaactcc atcctgataa atggacagta 
    1021 cagactatag tgctgccaga aaaagayagc tggactgtca atgacataca gaagttagtg 
    1081 ggaaaattaa attgggcaag tcagatttac tcagggatta agrtaargca attatgtaaa 
    1141 ctccttmggg gagccaaagc actaacagaa gttataccac taacagcaga agcagagatg 
    1201 garctggcag aa
//
last modified: Tue May 31 10:56 2022


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