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LOCUS DQ832117 1212 bp DNA linear VRL 08-NOV-2006
DEFINITION HIV-1 isolate 05-132862 from USA pol protein (pol) gene, partial
cds
ACCESSION DQ832117
VERSION DQ832117.1 GI:111052927
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1212)
Show all sequences for reference 1
AUTHORS Viani,R.M., Peralta,L., Aldrovandi,G., Kapogiannis,B.G.,
Mitchell,R., Spector,S.A., Lie,Y.S., Weidler,J.M., Bates,M.P.,
Liu,N. and Wilson,C.M.
CONSRTM Adolescent Medicine Trials Network for HIV/AIDS Interventions
TITLE Prevalence of Primary HIV-1 Drug Resistance among Recently Infected
Adolescents: A Multicenter Adolescent Medicine Trials Network for
HIV/AIDS Interventions Study
JOURNAL J. Infect. Dis. 194 (11), 1505-1509 (2006)
PUBMED 17083034
REFERENCE 2 (bases 1 to 1212)
Show all sequences for reference 2
AUTHORS Wilson,C.M., Viani,R.M., Aldrovandi,G., Kapogiannis,B.G.,
Mitchell,R., Spector,S.A., Lie,Y.S., Weidler,J.M., Bates,M.P. and
Liu,N.
CONSRTM Adolescent Medicine Network for HIV/AIDS Interventions (ATN)
TITLE Direct Submission
JOURNAL Submitted (29-JUN-2006) Pediatrics and Medicine, University of
Alabama at Birmingham, 845 19th South BBRB 220A, Birmingahm, AL
35294, USA
FEATURES Location/Qualifiers
source 1..1212
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="05-132862"
/isolation_source="patient with recently acquired HIV
infection (<180 days)"
/db_xref="taxon:11676"
/country="USA"
gene <1..>1212
/gene="pol"
CDS <1..>1212
/gene="pol"
/note="RT-PR"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="ABH03724.1"
/db_xref="GI:111052928"
/translation="PQITLWQRPVVTIKVGGQIKEALLDTGADDTVLEDMDLPGRWKP
KMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQLGCTLNFPIS
SIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDKEFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILEPFREXNPD
LXIYQYMDDLYVGSDLEIGQHRTKIEELRAHLLKWGFTTPDKKHQKEPPFLWMGYELH
PDKWTVQTIVLPEKDSWTVNDIQKLVGKLNWASQIYSGIKXXQLCKLLRGAKALTEVI
PLTAEAEMELAE"
BASE COUNT 464 a 191 c 253 g 285 t 19 other
ORIGIN
1 cctcaaatca ctctttggca acgacccgtt gtcacaataa aggtaggggg gcaaataaag
61 gaagctctat tagatacagg agcagatgat acagtrttag aagacatgga tttaccagga
121 agatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acagtatgat
181 cagatactca tagaaatttg tggacataaa gctataggta cagtgttagt aggacctaca
241 cctgtcaaca taattggaag aaatctgttg actcagcttg gttgcacttt aaatttcccc
301 attagttcta ttgaaactgt accagtraaa ttaaagccag gaatggatgg cccaaaagty
361 aarcaatggc cattgacaga agaaaaaata aaagcattag tagaaatttg tacagaratg
421 gaaaaggaag gaaaaatttc aaaaattgga cctgaaaatc catacaatac accagtattt
481 gctataaaaa agaaagacag tacaaaatgg agaaaattag tagattttag agaacttaat
541 aagagaacyc aagacttctg ggaagttcaa ttaggaatac cacatcctgc agggttaaaa
601 aagaaaaaat cagtaacagt attagatgtg ggtgatgcat atttttcagt tcccttggac
661 aargaattca graagtatac tgcatttact atacctagta caaacaatga gacaccaggg
721 attagatatc artacaatgt gcttccgcag ggatggaaag gatcaccagc aatattccaa
781 tgtagtatga caaaaatctt agagccyttt agagagamaa atccagacct arttatctat
841 caatacatgg atgatttgta tgtaggatct gacttagaaa taggacagca tagracaaaa
901 atagaggaac tgagagcaca tctgttgaar tggggattta ccaccccaga caaaaaacat
961 cagaaagaac ctccattcct ttggatgggt tatgaactcc atcctgataa atggacagta
1021 cagactatag tgctgccaga aaaagayagc tggactgtca atgacataca gaagttagtg
1081 ggaaaattaa attgggcaag tcagatttac tcagggatta agrtaargca attatgtaaa
1141 ctccttmggg gagccaaagc actaacagaa gttataccac taacagcaga agcagagatg
1201 garctggcag aa
//
last modified: Tue May 31 10:56 2022