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LOCUS DQ784879 865 bp RNA linear VRL 25-JAN-2007
DEFINITION Simian immunodeficiency virus isolate 1/28QC18-8 envelope
glycoprotein (env) gene, partial cds
ACCESSION DQ784879
VERSION DQ784879.1 GI:111146240
KEYWORDS .
SOURCE Simian immunodeficiency virus
ORGANISM Simian immunodeficiency virus Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 865)
Show all sequences for reference 1
AUTHORS Rivera-Amill,V., Noel,R.J. Jr.., Orsini,S., Tirado,G., Garcia,J.M.,
Buch,S. and Kumar,A.
TITLE Variable region 4 of SIV envelope correlates with rapid disease
progression in morphine-exposed macaques infected with SIV/SHIV
JOURNAL Virology 358 (2), 373-383 (2007)
PUBMED 17011009
REFERENCE 2 (bases 1 to 865)
Show all sequences for reference 2
AUTHORS Rivera-Amill,V. and Kumar,A.
TITLE Direct Submission
JOURNAL Submitted (16-JUN-2006) Microbiology, Ponce School of Medicine,
P.O. Box 7004, Ponce, PR 00716, USA
FEATURES Location/Qualifiers
source 1..865
/organism="Simian immunodeficiency virus"
/mol_type="genomic RNA"
/isolate="1/28QC18-8"
/db_xref="taxon:11723"
/country="Puerto Rico"
gene <1..>865
/gene="env"
CDS <1..>865
/gene="env"
/codon_start="3"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="ABH07148.1"
/db_xref="GI:111146241"
/translation="LLRCNDTNYSGFMPKCSKVVVSSCTRMMETQTSTWFGFNGTRAE
NRTYIYWHGRDNRTIISLNKYYNLTIKCKRPGNKTVLPITIMSGLVFHSQRINDRPRQ
AWCWFGGKWKDAIKEVKQTIVKHPRYTGTNNTDKINLTAPRGGDPEATFMWTNCRGEF
LYCKMNWFLNWVEDRNTANQEPKEQHKRNYVPCHIRQIINTWHKVGKNVYLPPREGDL
TCNSTVTSLIANIDWIDGNQTNITMSAEVAELYRLELGDYKLVEITPIGLAPTDVKRY
TTGGTSRNKRGS"
BASE COUNT 306 a 145 c 196 g 218 t
ORIGIN
1 ctttgcttag atgtaatgac acaaattatt caggctttat gcctaaatgt tctaaggtag
61 tggtctcttc atgcacaagg atgatggaga cacagacttc tacttggttt ggctttaatg
121 gaactagagc agaaaataga acttatattt actggcatgg tagggataat aggactataa
181 ttagtttaaa taagtattat aatctaacaa taaaatgtaa aagaccagga aataagacag
241 ttttaccaat caccattatg tctggattgg ttttccactc acaacgaatc aatgataggc
301 caaggcaggc atggtgttgg tttggaggaa aatggaagga tgcaataaaa gaggtgaagc
361 agaccattgt caaacatccc aggtatactg gaactaacaa tactgataaa atcaatttga
421 cggctcctag aggaggagat ccggaagcta ccttcatgtg gacaaattgc agaggagagt
481 tcctctactg taaaatgaat tggtttctaa attgggtaga agataggaat acagctaacc
541 aggagccaaa ggaacagcat aaaaggaatt acgtgccatg tcatatcaga caaataatca
601 acacttggca taaagtaggc aaaaatgttt atttgcctcc aagagaggga gacctcacgt
661 gtaactccac agtgaccagt ctcatagcaa acatagattg gattgatgga aaccaaacta
721 atatcaccat gagtgcagag gtggcagaac tgtatcgatt ggaattggga gattataaat
781 tagtagagat cactccaatt ggcttggccc ccacagatgt gaagaggtac actactggtg
841 gcacctcaag aaataaaaga gggtc
//
last modified: Tue May 31 10:56 2022