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LOCUS	    DQ784854		     866 bp    RNA     linear	VRL 25-JAN-2007
DEFINITION  Simian immunodeficiency virus isolate 1/04LC12-3 envelope
	    glycoprotein (env) gene, partial cds
ACCESSION   DQ784854
VERSION     DQ784854.1 GI:111146193
KEYWORDS    .
SOURCE	    Simian immunodeficiency virus
  ORGANISM  Simian immunodeficiency virus Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 866)
            Show all sequences for reference 1
  AUTHORS   Rivera-Amill,V., Noel,R.J. Jr.., Orsini,S., Tirado,G., Garcia,J.M.,
	    Buch,S. and Kumar,A.
  TITLE     Variable region 4 of SIV envelope correlates with rapid disease
	    progression in morphine-exposed macaques infected with SIV/SHIV
  JOURNAL   Virology 358 (2), 373-383 (2007)
  PUBMED    17011009
REFERENCE   2 (bases 1 to 866)
            Show all sequences for reference 2
  AUTHORS   Rivera-Amill,V. and Kumar,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-JUN-2006) Microbiology, Ponce School of Medicine,
	    P.O. Box 7004, Ponce, PR 00716, USA
FEATURES             Location/Qualifiers
     source	     1..866
		     /organism="Simian immunodeficiency virus"
		     /mol_type="genomic RNA"
		     /isolate="1/04LC12-3"
		     /db_xref="taxon:11723"
		     /country="Puerto Rico"
     gene	     <1..>866
		     /gene="env"
     CDS	     <1..>866
		     /gene="env"
		     /codon_start="3"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="ABH07126.1"
		     /db_xref="GI:111146194"
		     /translation="LLRCNDTNYSGFMPKCSKVVVSSCTRMMETQTSTWFGFNGTRAE
		     NRTYIYWHGRDNRTIISLNKYYNLTIKCRRPGNKTVLPVTIMSGLVFHSQRINDRPRQ
		     AWCWFGGKWKDAIKEVKQTIVKHPRYTGTNNTDKINLTAPRGGDPEGTFMWTNCRGEF
		     LYCKMNWFLNWVEDRNTANQKPKEQHKRNYVPCHIRQIINTWHKVGKNVYLPPREGDL
		     TCNSTVTSLIANINWIDGNQTNITMSAEVAELYRLELGDYKLVEITPIGLAPTDVKRY
		     TTGGPSRNKRGV"
BASE COUNT	304 a	 147 c	  198 g    217 t
ORIGIN
       1 ctttgcttag atgtaatgac acaaattatt caggctttat gcctaaatgt tctaaggtgg 
      61 tggtctcttc atgcacaagg atgatggaga cacagacttc tacttggttt ggctttaatg 
     121 gaactagagc agaaaataga acttatattt actggcatgg tagggataat aggactataa 
     181 ttagtttaaa taagtattat aatctaacaa taaaatgtag aagaccagga aataagacag 
     241 ttttaccagt caccattatg tccggattgg ttttccactc acaacgaatc aatgataggc 
     301 caaggcaggc atggtgttgg tttggaggaa aatggaagga tgcaataaaa gaggtgaagc 
     361 agaccattgt caaacatccc aggtatactg gaactaacaa tactgataaa atcaatttga 
     421 cggctcctag aggaggagat ccggaaggta ccttcatgtg gacaaattgc agaggagagt 
     481 tcctctactg taaaatgaat tggtttctaa attgggtaga agataggaat acagctaacc 
     541 agaaaccaaa ggaacagcat aaaaggaatt acgtgccatg tcatatcaga caaataatca 
     601 acacttggca taaagtaggc aaaaatgttt atttgcctcc aagagaggga gacctcacgt 
     661 gtaactccac agtgaccagt ctcatagcaa acataaattg gattgatgga aaccaaacta 
     721 atatcaccat gagtgcagag gtggcagaac tgtatcgatt ggaattggga gattataaat 
     781 tagtagagat cactccaatt ggcttggccc ccacagatgt gaagaggtac actactggtg 
     841 gcccctccag aaataaaaga ggggtc
//
last modified: Tue May 31 10:56 2022


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