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LOCUS DQ391342 373 bp RNA linear VRL 16-JUN-2006
DEFINITION HIV-1 clone rte5 from USA envelope glycoprotein (env) gene, partial
cds
ACCESSION DQ391342
VERSION DQ391342.1 GI:90191814
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 373)
Show all sequences for reference 1
AUTHORS Bailey,J.R., Sedaghat,A.R., Kieffer,T., Brennan,T., Lee,P.K.,
Wind-Rotolo,M., Haggerty,C.M., Kamireddi,A.R., Liu,Y., Lee,J.,
Persaud,D., Gallant,J.E., Cofrancesco,J. Jr.., Quinn,T.C.,
Wilke,C.O., Ray,S.C., Siliciano,J.D., Nettles,R.E. and
Siliciano,R.F.
TITLE Residual Human Immunodeficiency Virus Type 1 Viremia in Some
Patients on Antiretroviral Therapy Is Dominated by a Small Number
of Invariant Clones Rarely Found in Circulating CD4+ T Cells
JOURNAL J. Virol. 80 (13), 6441-6457 (2006)
PUBMED 16775332
REFERENCE 2 (bases 1 to 373)
Show all sequences for reference 2
AUTHORS Bailey,J.R., Sedaghat,A.R., Kieffer,T., Brennan,T., Kwon,P.,
Wind-Rotolo,M., Haggerty,C.M., Kamireddi,A.R., Liu,Y., Li,J.,
Persaud,D., Gallant,J.E., Cofrancesco,J. Jr.., Quinn,T.C.,
Wilke,C.O., Ray,S.C., Siliciano,J.D. and Nettles,R.E.
TITLE Direct Submission
JOURNAL Submitted (06-FEB-2006) Medicine, Johns Hopkins University School
of Medicine, 733 N Broadway, Baltimore, MD 21205, USA
REFERENCE 3
Show all sequences for reference 3
AUTHORS Wang,Z., Gurule,E.E., Brennan,T.P., Gerold,J.M., Kwon,K.J.,
Hosmane,N.N., Kumar,M.R., Beg,S.A., Capoferri,A.A., Ray,S.C.,
Ho,Y.-C., Hill,A.L., Siliciano,J.D. and Siliciano,R.F.
TITLE Expanded cellular clones carrying replication-competent HIV-1
persist, wax, and wane.
JOURNAL Proc. Natl. Acad. Sci. U. S. A.. 115(11); E2575-E2584 (2018)
PUBMED 29483265
FEATURES Location/Qualifiers
source 1..373
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolation_source="subject 154 plasma, time point 39"
/db_xref="taxon:11676"
/clone="rte5"
/country="USA"
gene <1..>373
/gene="env"
CDS <1..>373
/gene="env"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="ABD91636.1"
/db_xref="GI:90191815"
/translation="LNETVEINCTRPNNNTRKGINMGPGRAFFTTGDIIGNIRKAHCN
LSRTNWTTTLKRIAIKLREQFNRTFSQSSGGDPEIAMFSFNCGGEFFYCDSTQLFNFT
IILPCRIKQIINMWQGVGKAMY"
BASE COUNT 156 a 54 c 69 g 94 t
ORIGIN
1 ctgaatgaaa ctgtagaaat aaattgtaca agacccaaca acaatacaag aaaaggtata
61 aatatgggac caggcagagc attttttaca acaggagata taataggaaa tataagaaaa
121 gcacattgta acctgagtag aacaaactgg actaccactt taaaaaggat agctataaaa
181 ttaagagaac aatttaatag aacatttagc caatcctcag gaggagaccc agaaattgca
241 atgttcagtt ttaattgtgg aggggaattt ttctattgtg attcaacaca actgtttaat
301 tttactatca tactcccatg cagaataaaa caaattataa acatgtggca gggagtagga
361 aaagcaatgt atg
//
last modified: Tue May 31 10:56 2022