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LOCUS	    DQ391342		     373 bp    RNA     linear	VRL 16-JUN-2006
DEFINITION  HIV-1 clone rte5 from USA envelope glycoprotein (env) gene, partial
	    cds
ACCESSION   DQ391342
VERSION     DQ391342.1 GI:90191814
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 373)
            Show all sequences for reference 1
  AUTHORS   Bailey,J.R., Sedaghat,A.R., Kieffer,T., Brennan,T., Lee,P.K.,
	    Wind-Rotolo,M., Haggerty,C.M., Kamireddi,A.R., Liu,Y., Lee,J.,
	    Persaud,D., Gallant,J.E., Cofrancesco,J. Jr.., Quinn,T.C.,
	    Wilke,C.O., Ray,S.C., Siliciano,J.D., Nettles,R.E. and
	    Siliciano,R.F.
  TITLE     Residual Human Immunodeficiency Virus Type 1 Viremia in Some
	    Patients on Antiretroviral Therapy Is Dominated by a Small Number
	    of Invariant Clones Rarely Found in Circulating CD4+ T Cells
  JOURNAL   J. Virol. 80 (13), 6441-6457 (2006)
  PUBMED    16775332
REFERENCE   2 (bases 1 to 373)
            Show all sequences for reference 2
  AUTHORS   Bailey,J.R., Sedaghat,A.R., Kieffer,T., Brennan,T., Kwon,P.,
	    Wind-Rotolo,M., Haggerty,C.M., Kamireddi,A.R., Liu,Y., Li,J.,
	    Persaud,D., Gallant,J.E., Cofrancesco,J. Jr.., Quinn,T.C.,
	    Wilke,C.O., Ray,S.C., Siliciano,J.D. and Nettles,R.E.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-FEB-2006) Medicine, Johns Hopkins University School
	    of Medicine, 733 N Broadway, Baltimore, MD 21205, USA
REFERENCE   3
            Show all sequences for reference 3
  AUTHORS   Wang,Z., Gurule,E.E., Brennan,T.P., Gerold,J.M., Kwon,K.J.,
	    Hosmane,N.N., Kumar,M.R., Beg,S.A., Capoferri,A.A., Ray,S.C.,
	    Ho,Y.-C., Hill,A.L., Siliciano,J.D. and Siliciano,R.F.
  TITLE     Expanded cellular clones carrying replication-competent HIV-1
	    persist, wax, and wane.
  JOURNAL   Proc. Natl. Acad. Sci. U. S. A.. 115(11); E2575-E2584 (2018)
  PUBMED    29483265
FEATURES             Location/Qualifiers
     source	     1..373
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolation_source="subject 154 plasma, time point 39"
		     /db_xref="taxon:11676"
		     /clone="rte5"
		     /country="USA"
     gene	     <1..>373
		     /gene="env"
     CDS	     <1..>373
		     /gene="env"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="ABD91636.1"
		     /db_xref="GI:90191815"
		     /translation="LNETVEINCTRPNNNTRKGINMGPGRAFFTTGDIIGNIRKAHCN
		     LSRTNWTTTLKRIAIKLREQFNRTFSQSSGGDPEIAMFSFNCGGEFFYCDSTQLFNFT
		     IILPCRIKQIINMWQGVGKAMY"
BASE COUNT	156 a	  54 c	   69 g     94 t
ORIGIN
       1 ctgaatgaaa ctgtagaaat aaattgtaca agacccaaca acaatacaag aaaaggtata 
      61 aatatgggac caggcagagc attttttaca acaggagata taataggaaa tataagaaaa 
     121 gcacattgta acctgagtag aacaaactgg actaccactt taaaaaggat agctataaaa 
     181 ttaagagaac aatttaatag aacatttagc caatcctcag gaggagaccc agaaattgca 
     241 atgttcagtt ttaattgtgg aggggaattt ttctattgtg attcaacaca actgtttaat 
     301 tttactatca tactcccatg cagaataaaa caaattataa acatgtggca gggagtagga 
     361 aaagcaatgt atg
//
last modified: Tue May 31 10:56 2022


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