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LOCUS	    DQ391301		     373 bp    DNA     linear	VRL 16-JUN-2006
DEFINITION  HIV-1 clone re3 from USA envelope glycoprotein (env) gene, partial
	    cds
ACCESSION   DQ391301
VERSION     DQ391301.1 GI:90191733
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 373)
            Show all sequences for reference 1
  AUTHORS   Bailey,J.R., Sedaghat,A.R., Kieffer,T., Brennan,T., Lee,P.K.,
	    Wind-Rotolo,M., Haggerty,C.M., Kamireddi,A.R., Liu,Y., Lee,J.,
	    Persaud,D., Gallant,J.E., Cofrancesco,J. Jr.., Quinn,T.C.,
	    Wilke,C.O., Ray,S.C., Siliciano,J.D., Nettles,R.E. and
	    Siliciano,R.F.
  TITLE     Residual Human Immunodeficiency Virus Type 1 Viremia in Some
	    Patients on Antiretroviral Therapy Is Dominated by a Small Number
	    of Invariant Clones Rarely Found in Circulating CD4+ T Cells
  JOURNAL   J. Virol. 80 (13), 6441-6457 (2006)
  PUBMED    16775332
REFERENCE   2 (bases 1 to 373)
            Show all sequences for reference 2
  AUTHORS   Bailey,J.R., Sedaghat,A.R., Kieffer,T., Brennan,T., Kwon,P.,
	    Wind-Rotolo,M., Haggerty,C.M., Kamireddi,A.R., Liu,Y., Li,J.,
	    Persaud,D., Gallant,J.E., Cofrancesco,J. Jr.., Quinn,T.C.,
	    Wilke,C.O., Ray,S.C., Siliciano,J.D. and Nettles,R.E.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-FEB-2006) Medicine, Johns Hopkins University School
	    of Medicine, 733 N Broadway, Baltimore, MD 21205, USA
REFERENCE   3
            Show all sequences for reference 3
  AUTHORS   Wang,Z., Gurule,E.E., Brennan,T.P., Gerold,J.M., Kwon,K.J.,
	    Hosmane,N.N., Kumar,M.R., Beg,S.A., Capoferri,A.A., Ray,S.C.,
	    Ho,Y.-C., Hill,A.L., Siliciano,J.D. and Siliciano,R.F.
  TITLE     Expanded cellular clones carrying replication-competent HIV-1
	    persist, wax, and wane.
  JOURNAL   Proc. Natl. Acad. Sci. U. S. A.. 115(11); E2575-E2584 (2018)
  PUBMED    29483265
FEATURES             Location/Qualifiers
     source	     1..373
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolation_source="subject 154 resting CD4 cells, time
		     point 38"
		     /db_xref="taxon:11676"
		     /clone="re3"
		     /country="USA"
     gene	     <1..>373
		     /gene="env"
     CDS	     <1..>373
		     /gene="env"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="ABD91596.1"
		     /db_xref="GI:90191734"
		     /translation="LNETVIINCTRPNNNTRKSINMGPGRAFFTTGEIIGDIRKAHCN
		     LTRANWTETLKRIAIKLGEQFNKTFNQSSGGDPEIAMISFNCGGEFFYCNSTQLFNST
		     IILPCRIKQIINMWQGVGKAMY"
BASE COUNT	160 a	  52 c	   69 g     92 t
ORIGIN
       1 ctgaatgaaa ctgtaataat aaattgtaca agacccaaca acaatacaag aaaaagtata 
      61 aatatgggac caggcagagc attttttaca acaggagaaa taataggaga tataagaaaa 
     121 gcacattgta acctgactag agcaaattgg actgagactt taaaaagaat agccataaaa 
     181 ttaggagaac aatttaataa aacatttaac caatcctcag gaggggaccc agaaattgca 
     241 atgatcagtt ttaattgtgg aggggaattt ttctattgta attcaacaca actgtttaat 
     301 agtactatca tactcccatg cagaataaaa caaattataa atatgtggca gggagtagga 
     361 aaagcaatgt atg
//
last modified: Tue May 31 10:56 2022


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