HIV Databases HIV Databases home HIV Databases home
HIV Sequence Database



Download: ENTIRE SEQUENCE SEQUENCE FRAGMENT start end
Format:  
View NCBI entry		Download GenBank file		Graphics View		Download GFF3 File

LOCUS	    DQ375290		     815 bp    RNA     linear	VRL 29-MAY-2007
DEFINITION  HIV-1 isolate J11214 from Saudi Arabia gag protein (gag) gene,
	    partial cds
ACCESSION   DQ375290
VERSION     DQ375290.1 GI:87242029
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 815)
            Show all sequences for reference 1
  AUTHORS   Badreddine,S., Smith,K., van Zyl,H., Bodelle,P., Yamaguchi,J.,
	    Swanson,P., Devare,S.G. and Brennan,C.A.
  TITLE     Identification and characterization of HIV type 1 subtypes present
	    in the Kingdom of Saudi Arabia: high level of genetic diversity
	    found
  JOURNAL   AIDS Res. Hum. Retroviruses 23 (5), 667-674 (2007)
  PUBMED    17530991
REFERENCE   2 (bases 1 to 815)
            Show all sequences for reference 2
  AUTHORS   Badreddine,S., Smith,K., Zyl,H., Bodelle,P., Yamaguchi,J.,
	    Devare,S. and Brennan,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-JAN-2006) 09NG, Abbott Laboratories, 100 Abbott Park
	    Rd., Abbott Park, IL 60064-6015, USA
FEATURES             Location/Qualifiers
     source	     1..815
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="J11214"
		     /isolation_source="plasma"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="Saudi Arabia"
     gene	     <1..>815
		     /gene="gag"
     CDS	     <1..>815
		     /gene="gag"
		     /codon_start="2"
		     /transl_table="1"
		     /product="gag protein"
		     /protein_id="ABD33573.1"
		     /db_xref="GI:87242030"
		     /translation="ALDKIEEEQNKCQQKLEAADQGKVSQNYPIVQNLQGQMVHQHMS
		     PRTLNAWVKVIEEKGFNPEVIPMFTALSEGATPQDLNTMLNTVGGHQAAMQMLKDTIN
		     EEAAEWDRLHPVHAGPNPPGQMREPRGSDIAGVTSTLQEQIAWMTSNPPVPVGDIYKK
		     WIILGLNKIVRMYSPVCILDIKQGPKEPFRDYVDRFFKTLRAEQASQDVKNWMTDTLL
		     VQNANPDCKTILRALGPGASLEEMMTACQGVGGPSHKARVLAEAMSQANNANV"
BASE COUNT	308 a	 152 c	  191 g    164 t
ORIGIN
       1 agcattagac aagatagagg aagaacaaaa caaatgtcag cagaaattag aagcagctga 
      61 ccaaggaaaa gtcagtcaaa attatcctat agtacagaat ctccaagggc aaatggtaca 
     121 ccagcacatg tcacctagaa ctttgaatgc atgggtaaaa gtaatagagg agaagggttt 
     181 caacccagaa gtaataccca tgtttacagc attatcagaa ggagccaccc cacaagattt 
     241 aaacaccatg ttaaatacag tggggggaca tcaagcagct atgcaaatgt taaaagatac 
     301 catcaatgag gaggctgcag aatgggacag gttacatcca gtgcatgcag ggcctaatcc 
     361 accaggccaa atgagagaac caaggggaag tgacatagca ggagttacta gtacccttca 
     421 ggaacaaata gcatggatga caagtaaccc acctgttcca gtaggagaca tctataaaaa 
     481 atggataatt ctggggttaa ataaaatagt aagaatgtat agccctgtct gcattttgga 
     541 cataaaacaa gggccaaagg aaccctttag agactatgta gacaggttct ttaaaacctt 
     601 aagagctgaa caagcttcac aagatgtgaa aaattggatg acagacacct tgttggtcca 
     661 aaatgcgaac ccagattgta agaccatttt aagagcatta gggccagggg cttcattaga 
     721 agaaatgatg acagcatgtc aaggagtggg aggacctagc cacaaagcta gagtgttggc 
     781 tgaggcaatg agccaagcaa acaatgcaaa cgtaa
//
last modified: Tue May 31 10:56 2022


Questions or comments? Contact us at seq-info@lanl.gov.