HIV Databases HIV Databases home HIV Databases home
HIV Sequence Database



Download: ENTIRE SEQUENCE SEQUENCE FRAGMENT start end
Format:  
View NCBI entry		Download GenBank file		Graphics View		Download GFF3 File

LOCUS	    DQ370407		     889 bp    RNA     linear	VRL 03-AUG-2006
DEFINITION  Simian immunodeficiency virus isolate SIVcpzEK505 pol protein (pol)
	    gene, partial cds
ACCESSION   DQ370407
VERSION     DQ370407.1 GI:87137472
KEYWORDS    .
SOURCE	    Simian immunodeficiency virus
  ORGANISM  Simian immunodeficiency virus Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 889)
            Show all sequences for reference 1
  AUTHORS   Keele,B.F., Van Heuverswyn,F., Li,Y., Bailes,E., Takehisa,J.,
	    Santiago,M.L., Bibollet-Ruche,F., Chen,Y., Wain,L.V., Liegeois,F.,
	    Loul,S., Ngole,E.M., Bienvenue,Y., Delaporte,E., Brookfield,J.F.,
	    Sharp,P.M., Shaw,G.M., Peeters,M. and Hahn,B.H.
  TITLE     Chimpanzee reservoirs of pandemic and nonpandemic HIV-1
  JOURNAL   Science 313 (5786), 523-526 (2006)
  PUBMED    16728595
REFERENCE   2 (bases 1 to 889)
            Show all sequences for reference 2
  AUTHORS   Keele,B.F., Van Heuverswyn,F., Li,Y., Bailes,E., Takehisa,J.,
	    Santiago,M.L., Bibollet-Ruche,F., Chen,Y., Liegeois,F., Loul,S.,
	    Mpoudi Ngole,E., Bienvenue,Y., Delaporte,E., Brookfield,J.F.Y.,
	    Sharp,P.M., Shaw,G.M., Peeters,M. and Hahn,B.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-JAN-2006) Departments of Medicine and Micobiology,
	    University of Alabama at Birmingham, 720 South 20th Street, KAUL
	    816, Birmingham, AL 35294, USA
FEATURES             Location/Qualifiers
     source	     1..889
		     /organism="Simian immunodeficiency virus"
		     /mol_type="genomic RNA"
		     /isolate="SIVcpzEK505"
		     /isolation_source="fecal matter from wild Pan troglodytes
		     troglodytes"
		     /db_xref="taxon:11723"
		     /country="Cameroon"
     gene	     <1..>889
		     /gene="pol"
     CDS	     <1..>889
		     /gene="pol"
		     /codon_start="2"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ABD27952.1"
		     /db_xref="GI:87137473"
		     /translation="NRETKLGKAGFVTDRGRQKVTSISETTNQQAELQAVLMALQDAG
		     QEVNIVTDSQYVLGIIHSQPDKSESELVNQIIEELIKKERIYLSWVPAHKGIGGNEQI
		     DKLVSTGIRKVLFLDGIDKAQEEHERYHSNWKAMASDFNLPPIVAKEIVASCDKCQLK
		     GEAIHGQINCSPGVWQLDCTHLEGKIILVAVHVASGYLEAEVIPAETGQETAYFILKL
		     AGRWPVKVIHTDNGSNFTSATVKAACWWANIQQEFGIPYNPQSQGAVESMNKELKKII
		     GQIRDQAEHLKTAVQMAVFI"
BASE COUNT	339 a	 150 c	  195 g    205 t
ORIGIN
       1 taatagggaa actaaattag ggaaagcagg atttgtgaca gataggggta ggcaaaaggt 
      61 gacctctatc tcagaaacta ccaaccaaca agctgaatta caggctgtcc tcatggcctt 
     121 acaagatgca ggacaagaag taaatatagt cactgactct cagtatgtcc taggaataat 
     181 tcactcacaa ccagataaaa gtgaatcaga attagtaaat cagataatag aagaacttat 
     241 aaaaaaggaa agaatatatc tttcctgggt acctgcacat aaaggtattg gaggaaatga 
     301 acagatagac aaattagtca gcacaggaat caggaaagtc ttattcctag atggtataga 
     361 taaggctcaa gaagaacatg aaagatatca tagtaattgg aaggcaatgg ccagtgattt 
     421 taatctaccc cccatagtag ctaaagaaat agtagccagt tgtgataagt gtcaattgaa 
     481 aggagaagcc atacatgggc aaatcaactg tagtccaggg gtatggcaat tagattgcac 
     541 acatttggag ggaaaaatta tccttgtagc agtccatgtg gccagtggct acttagaagc 
     601 agaagtcatt cctgcagaaa caggacagga aactgcatat tttatcctaa agttagctgg 
     661 aagatggcca gtaaaagtca tacatactga taatgggagc aacttcacca gtgccactgt 
     721 aaaagcagcc tgttggtggg caaatatcca acaggagttt ggaataccct acaatcctca 
     781 aagtcagggt gcagtagaat ccatgaataa agaattaaag aaaattatag gacaaattag 
     841 agatcaagca gaacatttaa aaacagcagt acaaatggca gtcttcatt
//
last modified: Tue May 31 10:56 2022


Questions or comments? Contact us at seq-info@lanl.gov.