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LOCUS DQ370407 889 bp RNA linear VRL 03-AUG-2006
DEFINITION Simian immunodeficiency virus isolate SIVcpzEK505 pol protein (pol)
gene, partial cds
ACCESSION DQ370407
VERSION DQ370407.1 GI:87137472
KEYWORDS .
SOURCE Simian immunodeficiency virus
ORGANISM Simian immunodeficiency virus Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 889)
Show all sequences for reference 1
AUTHORS Keele,B.F., Van Heuverswyn,F., Li,Y., Bailes,E., Takehisa,J.,
Santiago,M.L., Bibollet-Ruche,F., Chen,Y., Wain,L.V., Liegeois,F.,
Loul,S., Ngole,E.M., Bienvenue,Y., Delaporte,E., Brookfield,J.F.,
Sharp,P.M., Shaw,G.M., Peeters,M. and Hahn,B.H.
TITLE Chimpanzee reservoirs of pandemic and nonpandemic HIV-1
JOURNAL Science 313 (5786), 523-526 (2006)
PUBMED 16728595
REFERENCE 2 (bases 1 to 889)
Show all sequences for reference 2
AUTHORS Keele,B.F., Van Heuverswyn,F., Li,Y., Bailes,E., Takehisa,J.,
Santiago,M.L., Bibollet-Ruche,F., Chen,Y., Liegeois,F., Loul,S.,
Mpoudi Ngole,E., Bienvenue,Y., Delaporte,E., Brookfield,J.F.Y.,
Sharp,P.M., Shaw,G.M., Peeters,M. and Hahn,B.H.
TITLE Direct Submission
JOURNAL Submitted (20-JAN-2006) Departments of Medicine and Micobiology,
University of Alabama at Birmingham, 720 South 20th Street, KAUL
816, Birmingham, AL 35294, USA
FEATURES Location/Qualifiers
source 1..889
/organism="Simian immunodeficiency virus"
/mol_type="genomic RNA"
/isolate="SIVcpzEK505"
/isolation_source="fecal matter from wild Pan troglodytes
troglodytes"
/db_xref="taxon:11723"
/country="Cameroon"
gene <1..>889
/gene="pol"
CDS <1..>889
/gene="pol"
/codon_start="2"
/transl_table="1"
/product="pol protein"
/protein_id="ABD27952.1"
/db_xref="GI:87137473"
/translation="NRETKLGKAGFVTDRGRQKVTSISETTNQQAELQAVLMALQDAG
QEVNIVTDSQYVLGIIHSQPDKSESELVNQIIEELIKKERIYLSWVPAHKGIGGNEQI
DKLVSTGIRKVLFLDGIDKAQEEHERYHSNWKAMASDFNLPPIVAKEIVASCDKCQLK
GEAIHGQINCSPGVWQLDCTHLEGKIILVAVHVASGYLEAEVIPAETGQETAYFILKL
AGRWPVKVIHTDNGSNFTSATVKAACWWANIQQEFGIPYNPQSQGAVESMNKELKKII
GQIRDQAEHLKTAVQMAVFI"
BASE COUNT 339 a 150 c 195 g 205 t
ORIGIN
1 taatagggaa actaaattag ggaaagcagg atttgtgaca gataggggta ggcaaaaggt
61 gacctctatc tcagaaacta ccaaccaaca agctgaatta caggctgtcc tcatggcctt
121 acaagatgca ggacaagaag taaatatagt cactgactct cagtatgtcc taggaataat
181 tcactcacaa ccagataaaa gtgaatcaga attagtaaat cagataatag aagaacttat
241 aaaaaaggaa agaatatatc tttcctgggt acctgcacat aaaggtattg gaggaaatga
301 acagatagac aaattagtca gcacaggaat caggaaagtc ttattcctag atggtataga
361 taaggctcaa gaagaacatg aaagatatca tagtaattgg aaggcaatgg ccagtgattt
421 taatctaccc cccatagtag ctaaagaaat agtagccagt tgtgataagt gtcaattgaa
481 aggagaagcc atacatgggc aaatcaactg tagtccaggg gtatggcaat tagattgcac
541 acatttggag ggaaaaatta tccttgtagc agtccatgtg gccagtggct acttagaagc
601 agaagtcatt cctgcagaaa caggacagga aactgcatat tttatcctaa agttagctgg
661 aagatggcca gtaaaagtca tacatactga taatgggagc aacttcacca gtgccactgt
721 aaaagcagcc tgttggtggg caaatatcca acaggagttt ggaataccct acaatcctca
781 aagtcagggt gcagtagaat ccatgaataa agaattaaag aaaattatag gacaaattag
841 agatcaagca gaacatttaa aaacagcagt acaaatggca gtcttcatt
//
last modified: Tue May 31 10:56 2022