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LOCUS DQ360201 639 bp DNA linear VRL 16-OCT-2009
DEFINITION HIV-1 isolate 235gMa99 from Malawi gag protein (gag) gene, partial
cds
ACCESSION DQ360201
VERSION DQ360201.2 GI:261414204
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 585)
Show all sequences for reference 1
AUTHORS McCormack,G.P., Glynn,J.R., Clewley,J.P., Crampin,A.C.,
Travers,S.A., Redmond,N., Keane,T.M., Sibande,F., Mulawa,D. and
Fine,P.E.
TITLE Emergence of a Three Codon Deletion in gag p17 in HIV Type 1
Subtype C Long-Term Survivors, and General Population Spread
JOURNAL AIDS Res. Hum. Retroviruses 22 (2), 195-201 (2006)
PUBMED 16478403
REFERENCE 2 (bases 1 to 585)
Show all sequences for reference 2
AUTHORS McCormack,G.P., Glynn,J.R., Clewley,J.P., Crampin,A.C.,
Travers,S.A., Redmond,N., Keane,T.M., Sibande,F., Mulawa,D. and
Fine,P.E.M.
TITLE Direct Submission
JOURNAL Submitted (12-JAN-2006) Zoology, National University of Ireland
Galway, University Rd., Galway, Ireland
COMMENT This sequence was revised in GenBank; HIVdb update 11/2010.
FEATURES Location/Qualifiers
source 1..639
/organism="Human immunodeficiency virus 1"
/proviral
/mol_type="genomic DNA"
/isolate="235gMa99"
/db_xref="taxon:11676"
/country="Malawi"
/note="subtype: C"
gene <1..>639
/gene="gag"
CDS <1..>639
/gene="gag"
/note="p17p24"
/codon_start="1"
/transl_table="1"
/product="gag protein"
/protein_id="ABD49043.2"
/db_xref="GI:261414205"
/translation="FALNPGLLETAEGCKQIIQQLQPALQTATEELRSLFNTVATLYC
VHERIEVRDTKEALDKIEEEQNKCQQKAQQAKMAEGKVSQNYPIVQNAQGQMVHQSIT
PRTLNAWVKVIEEKAFSPEVIPMFTALSEGATPSDLNTMLNTVGGHQAAMQMLKDTIN
EEAAEWDRLHPVHAGPVAPGQMREPRGSDIAGTTSTLQEQIAWITSNPPIPVG"
BASE COUNT 243 a 130 c 142 g 124 t
ORIGIN
1 tttgcactta accctggcct tttagagaca gcagaaggct gtaaacaaat aatacaacag
61 ctacaaccag ctcttcagac agcaacagag gaacttagat cattattcaa cacagtagca
121 actctctatt gtgtgcatga aaggatagaa gtacgagaca ccaaagaagc cttagacaag
181 atagaggaag aacaaaacaa gtgtcagcaa aaagcacagc aggcaaaaat ggctgaaggg
241 aaagtcagtc aaaattatcc tatagtgcag aatgcacaag ggcaaatggt acaccagtcc
301 ataacaccta ggactttaaa tgcatgggta aaagtaatag aggagaaggc ttttagtcca
361 gaggtaatac ccatgtttac agcattatca gaaggagcca ccccatcaga tttaaacacc
421 atgttaaata cagtaggggg acatcaagca gccatgcaaa tgttaaaaga taccattaat
481 gaggaggctg cagaatggga tagattacat cctgtacatg cagggcctgt tgcaccaggc
541 caaatgagag aaccaagggg aagtgacata gcaggaacta ctagtaccct tcaggaacaa
601 atagcatgga taacaagtaa cccacctatc ccagtggga
//
last modified: Tue May 31 10:56 2022