HIV Databases HIV Databases home HIV Databases home
HIV Sequence Database



Download: ENTIRE SEQUENCE SEQUENCE FRAGMENT start end
Format:  
View NCBI entry		Download GenBank file		Graphics View		Download GFF3 File

LOCUS	    DQ360201		     639 bp    DNA     linear	VRL 16-OCT-2009
DEFINITION  HIV-1 isolate 235gMa99 from Malawi gag protein (gag) gene, partial
	    cds
ACCESSION   DQ360201
VERSION     DQ360201.2 GI:261414204
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 585)
            Show all sequences for reference 1
  AUTHORS   McCormack,G.P., Glynn,J.R., Clewley,J.P., Crampin,A.C.,
	    Travers,S.A., Redmond,N., Keane,T.M., Sibande,F., Mulawa,D. and
	    Fine,P.E.
  TITLE     Emergence of a Three Codon Deletion in gag p17 in HIV Type 1
	    Subtype C Long-Term Survivors, and General Population Spread
  JOURNAL   AIDS Res. Hum. Retroviruses 22 (2), 195-201 (2006)
  PUBMED    16478403
REFERENCE   2 (bases 1 to 585)
            Show all sequences for reference 2
  AUTHORS   McCormack,G.P., Glynn,J.R., Clewley,J.P., Crampin,A.C.,
	    Travers,S.A., Redmond,N., Keane,T.M., Sibande,F., Mulawa,D. and
	    Fine,P.E.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2006) Zoology, National University of Ireland
	    Galway, University Rd., Galway, Ireland
COMMENT     This sequence was revised in GenBank; HIVdb update 11/2010.
FEATURES             Location/Qualifiers
     source	     1..639
		     /organism="Human immunodeficiency virus 1"
		     /proviral
		     /mol_type="genomic DNA"
		     /isolate="235gMa99"
		     /db_xref="taxon:11676"
		     /country="Malawi"
		     /note="subtype: C"
     gene	     <1..>639
		     /gene="gag"
     CDS	     <1..>639
		     /gene="gag"
		     /note="p17p24"
		     /codon_start="1"
		     /transl_table="1"
		     /product="gag protein"
		     /protein_id="ABD49043.2"
		     /db_xref="GI:261414205"
		     /translation="FALNPGLLETAEGCKQIIQQLQPALQTATEELRSLFNTVATLYC
		     VHERIEVRDTKEALDKIEEEQNKCQQKAQQAKMAEGKVSQNYPIVQNAQGQMVHQSIT
		     PRTLNAWVKVIEEKAFSPEVIPMFTALSEGATPSDLNTMLNTVGGHQAAMQMLKDTIN
		     EEAAEWDRLHPVHAGPVAPGQMREPRGSDIAGTTSTLQEQIAWITSNPPIPVG"
BASE COUNT	243 a	 130 c	  142 g    124 t
ORIGIN
       1 tttgcactta accctggcct tttagagaca gcagaaggct gtaaacaaat aatacaacag 
      61 ctacaaccag ctcttcagac agcaacagag gaacttagat cattattcaa cacagtagca 
     121 actctctatt gtgtgcatga aaggatagaa gtacgagaca ccaaagaagc cttagacaag 
     181 atagaggaag aacaaaacaa gtgtcagcaa aaagcacagc aggcaaaaat ggctgaaggg 
     241 aaagtcagtc aaaattatcc tatagtgcag aatgcacaag ggcaaatggt acaccagtcc 
     301 ataacaccta ggactttaaa tgcatgggta aaagtaatag aggagaaggc ttttagtcca 
     361 gaggtaatac ccatgtttac agcattatca gaaggagcca ccccatcaga tttaaacacc 
     421 atgttaaata cagtaggggg acatcaagca gccatgcaaa tgttaaaaga taccattaat 
     481 gaggaggctg cagaatggga tagattacat cctgtacatg cagggcctgt tgcaccaggc 
     541 caaatgagag aaccaagggg aagtgacata gcaggaacta ctagtaccct tcaggaacaa 
     601 atagcatgga taacaagtaa cccacctatc ccagtggga
//
last modified: Tue May 31 10:56 2022


Questions or comments? Contact us at seq-info@lanl.gov.