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LOCUS	    DQ346044		     627 bp    DNA     linear	VRL 15-AUG-2006
DEFINITION  Simian immunodeficiency virus isolate 1/42N.4-7 nef protein (nef)
	    gene, partial cds
ACCESSION   DQ346044
VERSION     DQ346044.1 GI:85680595
KEYWORDS    .
SOURCE	    Simian immunodeficiency virus
  ORGANISM  Simian immunodeficiency virus Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 627)
            Show all sequences for reference 1
  AUTHORS   Noel,R.J., Toro-Bahamonde,A., Marrero-Otero,Z., Orsini,S.,
	    Verma,A.S., Kumar,R. and Kumar,A.
  TITLE     Lack of correlation between SIV-Nef evolution and rapid disease
	    progression in morphine-dependent nonhuman primate model of AIDS.
  JOURNAL   AIDS Res. Hum. Retroviruses 22 (8), 817-23 (2006)
  PUBMED    16910840
REFERENCE   2 (bases 1 to 627)
            Show all sequences for reference 2
  AUTHORS   Noel,R.J. Jr.., Toro-Bahamonde,A., Marrero-Otero,Z., Kumar,R.,
	    Yamamura,Y. and Kumar,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-DEC-2005) Biochemistry, Ponce School of Medicine, 395
	    Urb. Industrial Reparada, Zona 2, Ponce, PR 00716, USA
FEATURES             Location/Qualifiers
     source	     1..627
		     /organism="Simian immunodeficiency virus"
		     /proviral="Simian immunodeficiency virus"
		     /mol_type="genomic DNA"
		     /isolate="1/42N.4-7"
		     /db_xref="taxon:11723"
     gene	     1..>627
		     /gene="nef"
     CDS	     1..>627
		     /gene="nef"
		     /codon_start="1"
		     /transl_table="1"
		     /product="nef protein"
		     /protein_id="ABC72497.1"
		     /db_xref="GI:85680596"
		     /translation="MGGAISMRRSRSSGDLRQRLLRARGETYGRLLGEVEDGYSQSPG
		     GLDKGLSSLSCEGQKYNQGQYMNTPWRNPAKEREKLAYRKQNMDDIDEQDDDLVGVSV
		     RPKVPLRTMSYKLAIDISHFIKEKGGLEGIYYSARRHRILDIYLEKEKGIIPDWQDYT
		     SGPGIRFPKTFGWLWKLVPVNVSDEAQEDEEHYLMHPAQTSQWDDPWGE"
BASE COUNT	214 a	 105 c	  171 g    137 t
ORIGIN
       1 atgggtggag ctatttccat gaggcggtcc aggtcgtctg gagatctgcg acagagactc 
      61 ttgcgggcgc gtggggagac ttatgggaga ctcttaggag aggtggaaga tggatactcg 
     121 caatccccag gaggattaga caagggcttg agctcactct cttgtgaggg acaaaaatac 
     181 aatcagggac agtatatgaa tactccatgg agaaacccag ctaaagagag agaaaaatta 
     241 gcatacagaa aacaaaatat ggatgatata gatgagcaag atgatgactt ggtaggggta 
     301 tcagtgaggc caaaagttcc cctaagaaca atgagttaca aattggcaat agacatatct 
     361 cattttataa aagaaaaggg gggactggaa gggatttatt acagtgcaag aagacataga 
     421 atcttagaca tatacttaga aaaggaaaaa ggcatcatac cagattggca ggattacacc 
     481 tcaggaccag gaattagatt cccaaagaca tttggctggc tatggaaatt agtccctgta 
     541 aatgtatcag atgaggcaca ggaggatgag gagcattatt taatgcatcc agctcaaact 
     601 tcccagtggg atgacccttg gggagag
//
last modified: Tue May 31 10:56 2022


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