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LOCUS DQ296756 2560 bp RNA linear VRL 14-MAR-2006
DEFINITION HIV-1 clone 04102000_13 from USA envelope glycoprotein (env) gene,
partial cds
ACCESSION DQ296756
VERSION DQ296756.1 GI:89277465
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2560)
Show all sequences for reference 1
AUTHORS Frost,S.D.W., Wrin,T., Smith,D.M., Kosakovsky Pond,S.L., Liu,Y.,
Paxinos,E., Chappey,C., Galovich,J., Beauchaine,J.,
Petropoulos,C.J., Little,S.J. and Richman,D.D.
TITLE Neutralizing antibody responses drive the evolution of human
immunodeficiency virus type 1 envelope during recent HIV infection
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 102 (51), 18514-18519 (2005)
PUBMED 16339909
REFERENCE 2 (bases 1 to 2560)
Show all sequences for reference 2
AUTHORS Frost,S.D.W., Wrin,T., Smith,D.M., Kosakovsky Pond,S.L., Liu,Y.,
Paxinos,E., Chappey,C., Galovich,J., Beauchaine,J.,
Petropoulos,C.J., Little,S.J. and Richman,D.D.
TITLE Direct Submission
JOURNAL Submitted (15-NOV-2005) Pathology, University of California, San
Diego, 9500 Gilman Drive, La Jolla, CA 92093-0679, USA
FEATURES Location/Qualifiers
source 1..2560
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="patient 050100839"
/db_xref="taxon:11676"
/clone="04102000_13"
/country="USA"
/note="genotype: B"
gene <1..>2560
/gene="env"
CDS <1..>2560
/gene="env"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="ABD66839.1"
/db_xref="GI:89277466"
/translation="RVTEIKKSYQNSWKGGILLLWKWGTMLLGILMICNATEQLWVTV
YYGVPVWKEATTTLFCASDAKAYDSEVHNVWATHACVPTDPNPQEVVLGNVTENFNMW
KNDMVEQMREDIISLWDASLKPCVKLTPLCVTLNCTDVSATNTTNSSISMEGEIKNCS
FNITTNMRDKVQKEYSLFYKLDVVPIDNNTNYRLISCNTSVITQACPKVTFEPIPIHY
CTPAGFAILKCNNKTFSGTGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEEEIVIRSE
NFTNNAKIIIVHLNESVEINCTRPNNNTRKGIHIGPGRAFYATEIIGDIRQAHCNISR
AKWNKTLSQIVGKLREQFENKTIVFNQSSGGDPEIVMHSFNCGGEFFYCNTTQLFNST
WNDTTGSSNNGENSTTITLPCRMRQIINMWQEVGKAMYAPPIRGPIKCSSNITGLLLT
RDGGKNTNTSENETEIFRPGGGDMRDNWRSELYKYKVVKIEPLGIAPTKAKRRVVQRE
KRAVGLGAMFLGFLGAAGSTMGAASVTLTVQARQLLSGIVQQQNNLLKAIEAQQHLLQ
LTVWGIKQLQARILAVERYLKDQQLLGIWGCSGKLICTTSVPWNTSWSGNRSLTDIWD
NMTWMEWEREIDNYTNLIYSLILESQNQQDKNEKELLELDKWASLWNWFDITNWLWYI
KIFIMIVGGLVGLRIVFTVFSIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGER
GRDRSGRLVNGFLELIWIDLRSLCLFSYHRLRDLLLIVTRIVELLGRRGWEALKYWWN
LLQYWIQELKNSAVSLLNATAIAVAEGTDRVIEVLQRAGRALLHIPRRIRQGAGK"
BASE COUNT 887 a 441 c 611 g 621 t
ORIGIN
1 agagtgacgg agatcaagaa gagttatcaa aactcgtgga aagggggcat cttgctcttg
61 tggaaatggg gcaccatgct ccttgggata ttaatgattt gtaatgctac agaacaattg
121 tgggtcacag tctattatgg ggtacctgtg tggaaagaag caaccaccac tttattttgt
181 gcatcagatg ctaaagcata tgattcagag gtacataatg tttgggccac acatgcctgt
241 gtacccacag accccaaccc acaagaagta gtattaggaa atgtgactga aaattttaac
301 atgtggaaaa atgacatggt agaacagatg cgtgaggata taatcagttt atgggatgca
361 agcttaaagc catgtgtaaa gttaacccca ctctgtgtta ctctaaattg cactgatgtg
421 agtgctacta ataccaccaa tagtagcata tcgatggagg gagaaataaa aaactgctct
481 ttcaatatca ccacaaacat gagagataag gtgcagaaag aatattcact tttttataaa
541 cttgatgtag taccaataga taataatacc aactataggt tgataagttg taacacctca
601 gtcattaccc aggcttgtcc aaaggtaacc tttgagccaa tccccataca ttattgtacc
661 ccggctggtt ttgcgattct aaagtgtaac aataaaacgt tcagtggaac aggaccatgc
721 aaaaatgtca gcacggtaca atgtacacat ggaattaaac cagtagtatc aactcaattg
781 ctgttaaatg gaagtctagc agaagaagag atagtaatta gatctgaaaa tttcacaaac
841 aatgctaaaa tcatcatagt acatctgaac gaatctgtag aaattaattg tacaaggcct
901 aacaacaata caagaaaagg tatacatata ggaccaggaa gagcatttta tgcaacagaa
961 ataataggag atataagaca agcacattgt aacattagta gagcaaaatg gaataaaact
1021 ttaagtcaga tagttggaaa attaagagaa caatttgaga ataaaacaat agtctttaat
1081 caatcctcag gaggggaccc agaaattgta atgcacagtt ttaattgtgg aggggagttt
1141 ttctactgta atacaacaca actgtttaat agtacttgga acgatactac agggtcaagt
1201 aacaatggag aaaatagcac aaccatcacg ctcccatgca gaatgagaca aattataaac
1261 atgtggcagg aagtaggaaa agcaatgtat gcccctccca tcagaggacc aattaaatgt
1321 tcttcaaata ttacagggct gctattaaca agagatggtg gtaagaacac gaacacgagc
1381 gagaatgaga ctgagatctt cagacctggg ggaggagata tgagggacaa ttggagaagt
1441 gaattatata aatataaagt agtaaaaatt gaaccattag gaatagcacc caccaaggca
1501 aagagaagag tggtgcagag agaaaaaaga gcagtgggac taggagctat gttccttggg
1561 ttcttgggag cagcaggaag cactatgggc gcagcgtcag tgacgctgac ggtacaggcc
1621 agacaattat tgtctggtat agtgcaacag cagaacaatc tgctgaaggc tattgaggcg
1681 caacagcacc tgttgcaact cacagtctgg ggcatcaagc agctccaggc aagaatcctg
1741 gctgtggaaa gatacctaaa ggaccaacag ctcctgggga tttggggttg ctctggaaaa
1801 ctcatttgca ccacttctgt gccttggaat actagttgga gtgggaatag atctctgact
1861 gatatttggg acaacatgac ttggatggag tgggaaagag aaattgacaa ttacacaaac
1921 ttaatatact ccttaatttt agaatcgcag aaccaacaag acaaaaatga aaaagagtta
1981 ttggaattgg ataaatgggc aagtttgtgg aattggttcg acataacaaa ttggctgtgg
2041 tatataaaaa tattcatcat gatagtagga ggcttggtag ggttaagaat agtttttact
2101 gtattttcta tagtgaatag agttaggcag ggatattcac cactatcgtt tcagacccac
2161 ctcccagctc cgaggggacc cgacaggccc gaaggaatcg aagaagaagg tggagagaga
2221 ggcagagaca gatccggaag attagtgaat ggattcttag aacttatctg gatcgatctg
2281 aggagcctgt gcctcttcag ctaccaccgc ttgagagact tactcttgat tgtaacgagg
2341 attgtggaac ttctgggacg cagggggtgg gaagctctga aatattggtg gaatctccta
2401 cagtattgga tacaggaact aaagaatagt gctgttagct tgctcaacgc cacagccata
2461 gcagtagctg aggggacaga tagggttata gaagtattac aaagagctgg tagagctctt
2521 ctccacatac ctagaagaat aagacagggg gccggaaagg
//
last modified: Tue May 31 10:56 2022