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LOCUS DQ296746 2555 bp RNA linear VRL 14-MAR-2006
DEFINITION HIV-1 clone 10051999_F4 from USA envelope glycoprotein (env) gene,
partial cds
ACCESSION DQ296746
VERSION DQ296746.1 GI:89277445
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2555)
Show all sequences for reference 1
AUTHORS Frost,S.D.W., Wrin,T., Smith,D.M., Kosakovsky Pond,S.L., Liu,Y.,
Paxinos,E., Chappey,C., Galovich,J., Beauchaine,J.,
Petropoulos,C.J., Little,S.J. and Richman,D.D.
TITLE Neutralizing antibody responses drive the evolution of human
immunodeficiency virus type 1 envelope during recent HIV infection
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 102 (51), 18514-18519 (2005)
PUBMED 16339909
REFERENCE 2 (bases 1 to 2555)
Show all sequences for reference 2
AUTHORS Frost,S.D.W., Wrin,T., Smith,D.M., Kosakovsky Pond,S.L., Liu,Y.,
Paxinos,E., Chappey,C., Galovich,J., Beauchaine,J.,
Petropoulos,C.J., Little,S.J. and Richman,D.D.
TITLE Direct Submission
JOURNAL Submitted (15-NOV-2005) Pathology, University of California, San
Diego, 9500 Gilman Drive, La Jolla, CA 92093-0679, USA
FEATURES Location/Qualifiers
source 1..2555
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="patient 050100839"
/db_xref="taxon:11676"
/clone="10051999_F4"
/country="USA"
/note="genotype: B"
gene <1..>2555
/gene="env"
CDS <1..>2555
/gene="env"
/codon_start="3"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="ABD66829.1"
/db_xref="GI:89277446"
/translation="EIKKSYQNLWKGGILLLWKWGTMLLGILMICNATEQLWVTVYYG
VPVWKEATTTLFCASDAKAYDPEVHNVWATHACVPTDPNPQEVVLGSVTENFNMWKND
MVEQMHEDIISLWDASLKPCVKLTPLCVTLNCTDVNATNTTNSSISMEGEIKNCSFNI
TTNMRDKVQKEYSLFYKLDVVPIDNNTNYRLISCNTSVITQACPKVTFEPIPIHYCTP
AGFAILKCNNKTFSGTGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEEEIVIRSENFT
NNAKIIIVHLNESVEINCTRPNNNTRKGIHIGPGRAFYATEIIGDIRQAHCNISRAKW
NKTLSQIVGKLREQFENKTIVFNQSSGGDPEIVMHNFNCGGEFFYCNTTQLFNSTWND
TAGSSNNGENSTTITLPCRMRQIINMWQEVGKAMYAPPIRGPIKCSSNITGLLLTRDG
GKNTNTSENETEIFRPGGGDMRDNWRSELYKYKVVKIEPLGIAPTKAKRRVVQREKRA
VGLGAMFLGFLGAAGSTMGAASVTLTVQARQLLSGIVQQQNNLLKAIEAQQHLLQLTV
WGIKQLQARILAVERYLKDQQLLGIWGCSGKLICTTSVPWNTSWSGNRSLTDIWNNMT
WMEWEREIDNYTNLIYSLILESQNQQDKNEKELLELDKWASLWNWFDITNWLWYIKIF
IMIVGGLVGLRIVFTVFSIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERGRD
RSGRLVTGFLELIWIDLRSLCLFSYHRLRDLLLIVTRIVELLGRRGWEALKYWWNLLQ
YWIQELKNSAVSLLNATAIAVAEGTDRVIEVLQRAGRALLHIPRRIRQGAERA"
BASE COUNT 884 a 443 c 606 g 622 t
ORIGIN
1 cggagatcaa gaagagttat caaaacttgt ggaaaggggg catcttgctc ttgtggaaat
61 ggggcaccat gctccttggg atattaatga tttgtaatgc tacagaacaa ttgtgggtca
121 cagtctatta tggggtacct gtgtggaaag aagcaaccac cactttattt tgtgcatcag
181 atgctaaagc atatgatcca gaggtacata atgtttgggc cacacatgcc tgtgtaccca
241 cagaccccaa cccacaagaa gtagtattag gaagtgtgac tgaaaatttt aacatgtgga
301 aaaatgacat ggtagaacag atgcatgagg atataatcag tttatgggat gcaagcttaa
361 agccatgtgt aaaattaacc ccactctgtg ttactctaaa ttgcactgat gtgaatgcta
421 ctaataccac caatagtagc atatcgatgg agggagaaat aaaaaactgc tctttcaata
481 tcaccacaaa catgagagat aaggtgcaga aagaatattc acttttttat aaacttgatg
541 tagtaccaat agataataat accaactata ggttgataag ttgtaacacc tcagtcatta
601 cccaggcttg tccaaaggta acctttgagc caatccccat acattattgt accccggctg
661 gttttgcgat tctaaagtgt aacaataaaa cgttcagtgg aacaggacca tgcaaaaatg
721 tcagcacagt acaatgtaca catggaatta agccagtagt atcaactcaa ttgctgttaa
781 atggaagtct agcagaagaa gagatagtaa ttagatctga aaatttcaca aacaatgcta
841 aaatcatcat agtacatcta aacgaatctg tagaaattaa ttgtacaagg cctaacaaca
901 atacaagaaa aggtatacat ataggaccag gaagagcatt ttatgcaaca gaaataatag
961 gagatataag acaagcacat tgtaacatta gtagagcaaa atggaataaa actttaagtc
1021 agatagttgg aaaattaaga gaacaatttg agaataaaac aatagtcttt aatcaatcct
1081 caggagggga cccagaaatt gtaatgcaca attttaattg tggaggggag tttttctact
1141 gtaatacaac acaactgttt aatagtactt ggaatgatac tgcagggtca agtaacaatg
1201 gagaaaatag cacaaccatc acgctcccat gcagaatgag acaaattata aacatgtggc
1261 aggaagtggg aaaagcaatg tacgcccctc ccatcagagg accaattaaa tgttcttcaa
1321 atattacagg gctgctatta acaagagatg gtggtaagaa cacgaacacg agcgagaatg
1381 agactgagat cttcagacct gggggaggag atatgaggga caattggaga agtgaattat
1441 ataaatataa agtagtaaaa attgaaccat taggaatagc acccaccaag gcaaagagaa
1501 gagtggtgca gagagaaaaa agagcagtgg gactaggagc tatgttcctt gggttcttgg
1561 gagcagcagg aagcactatg ggcgcagcgt cagtgacgct gacggtacag gccagacaat
1621 tattgtctgg tatagtgcaa cagcagaaca atctgctgaa ggctattgag gcgcagcagc
1681 acctgttgca actcacagtc tggggcatca agcagctcca ggcaagaatc ctggctgtgg
1741 aaagatacct aaaggaccaa cagctcctgg ggatttgggg ttgctctgga aaactcattt
1801 gcaccacttc tgtgccttgg aatactagtt ggagtgggaa tagatctctg actgatattt
1861 ggaacaacat gacttggatg gagtgggaaa gagaaattga caattacaca aacttaatat
1921 actccttaat tttagaatcg cagaaccaac aagacaaaaa tgaaaaagag ttattggaat
1981 tggataaatg ggcaagtttg tggaattggt ttgacataac aaattggctg tggtatataa
2041 aaatattcat catgatagta ggaggcttgg tagggttaag aatagttttt actgtatttt
2101 ctatagtgaa tagagttagg cagggatatt caccactatc gtttcagacc cacctcccag
2161 ctccgagggg acccgacagg cccgaaggaa tcgaagaaga aggtggagag agaggcagag
2221 acagatccgg acgattagtg actggattct tagaacttat ctggatcgat ctgaggagcc
2281 tgtgcctctt cagctaccac cgcttgagag acttactctt gattgtaacg aggattgtgg
2341 aacttctggg acgcaggggg tgggaagctc tgaaatattg gtggaatctc ctacagtatt
2401 ggatacagga actaaagaat agtgctgtta gcttgctcaa cgccacagcc atagcagtag
2461 ctgaggggac agatagggtt atagaagtat tacaaagagc tggtagagct cttctccaca
2521 tacctagaag aataagacag ggggccgaaa gggct
//
last modified: Tue May 31 10:56 2022