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HIV Sequence Database



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LOCUS	    DQ296745		    2561 bp    RNA     linear	VRL 14-MAR-2006
DEFINITION  HIV-1 clone 10051999_F2 from USA envelope glycoprotein (env) gene,
	    partial cds
ACCESSION   DQ296745
VERSION     DQ296745.1 GI:89277443
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2561)
            Show all sequences for reference 1
  AUTHORS   Frost,S.D.W., Wrin,T., Smith,D.M., Kosakovsky Pond,S.L., Liu,Y.,
	    Paxinos,E., Chappey,C., Galovich,J., Beauchaine,J.,
	    Petropoulos,C.J., Little,S.J. and Richman,D.D.
  TITLE     Neutralizing antibody responses drive the evolution of human
	    immunodeficiency virus type 1 envelope during recent HIV infection
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 102 (51), 18514-18519 (2005)
  PUBMED    16339909
REFERENCE   2 (bases 1 to 2561)
            Show all sequences for reference 2
  AUTHORS   Frost,S.D.W., Wrin,T., Smith,D.M., Kosakovsky Pond,S.L., Liu,Y.,
	    Paxinos,E., Chappey,C., Galovich,J., Beauchaine,J.,
	    Petropoulos,C.J., Little,S.J. and Richman,D.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-NOV-2005) Pathology, University of California, San
	    Diego, 9500 Gilman Drive, La Jolla, CA 92093-0679, USA
FEATURES             Location/Qualifiers
     source	     1..2561
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="patient 050100839"
		     /db_xref="taxon:11676"
		     /clone="10051999_F2"
		     /country="USA"
		     /note="genotype: B"
     gene	     <1..>2561
		     /gene="env"
     CDS	     <1..>2561
		     /gene="env"
		     /codon_start="3"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="ABD66828.1"
		     /db_xref="GI:89277444"
		     /translation="VAEIKKSYQNLWKGGILLLWKWGTMLLGILMICNATEQLWVTVY
		     YGVPVWKEATTTLFCASDAKAYDPEVHNVWATHACVPTDPNPQEVVLGNVTENFNMWK
		     NDMVEQMHEDIISLWDASLKPCVKLTPLCVTLNCTDVNATNTTNSSISMEGEIKNCSF
		     NITTNMRDKVQKEYSLFYKLDVVPIDNNTNYRLISCNTSVITQACPKVTFEPIPIHYC
		     TPAGFAILKCNNKTFSGTGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEEEIVIRSEN
		     FTNNAKIIIVHLNESVEINCTRPNNNTRKGIHIGPGRAFYATEIIGDIRQAHCNISRA
		     KWNKTLSQIVGKLREQFENKTIVFNQSSGGDPEIVMHNFNCGGEFFYCNTTQLFNSTW
		     NDTAGSSNNGENSTTITLPCRMRQIINMWQEVGKAMYAPPIRGPIKCSSNITGLLLTR
		     DGGKNTNTSENETEIFRPGGGDMRDNWRSELYKYKVVKIEPLGIAPTKAKRRVVQREK
		     RAVGLGAMFLGFLGAAGSTMGAASVTLTVQARQLLSGIVQQQNNLLKAIEAQQHLLQL
		     TVWGIKQLQARILAVERYLKDQQLLGIWGCSGKLICTTSVPWNTSWSGNRSLTDIWNN
		     MTWMEWEREIDNYTNLIYSLISESQNQQDKNEKELLELDKWASLWNWFDITNWLWYIK
		     IFIMIVGGLVGLRIVFTVFSIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERG
		     RDRSGRLVTGFLELIWIDLRSLCLFSYHRLRDLLLIVTRIVELLGRRGWEALKYWWNL
		     LQYWIQELKNSAVSLLNATAIAVAEGTDRVIEVLQRAGRALLHIPRRIRQGAKRA"
BASE COUNT	887 a	 443 c	  608 g    623 t
ORIGIN
       1 gagtggcgga gatcaagaag agttatcaaa acttgtggaa agggggcatc ttgctcttgt 
      61 ggaaatgggg caccatgctc cttgggatat taatgatttg taatgctaca gaacaattgt 
     121 gggtcacagt ctattatggg gtacctgtgt ggaaagaagc aaccaccact ttattttgtg 
     181 catcagatgc taaagcatat gatccagagg tacataatgt ttgggccaca catgcctgtg 
     241 tacccacaga ccccaaccca caagaagtag tattaggaaa tgtgactgaa aattttaaca 
     301 tgtggaaaaa tgacatggta gaacagatgc atgaggatat aatcagttta tgggatgcaa 
     361 gcttaaagcc atgtgtaaaa ttaaccccac tctgtgttac tctaaattgc actgatgtga 
     421 atgctactaa taccaccaat agtagcatat cgatggaggg agaaataaaa aactgctctt 
     481 tcaatatcac cacaaacatg agagataagg tgcagaaaga atattcactt ttttataaac 
     541 ttgatgtagt accaatagat aataatacca actataggtt gataagttgt aacacctcag 
     601 tcattaccca ggcttgtcca aaggtaacct ttgagccaat ccccatacat tattgtaccc 
     661 cggctggttt tgcgattcta aagtgtaaca ataaaacgtt cagtggaaca ggaccatgca 
     721 aaaatgtcag cacagtacaa tgtacacatg gaattaagcc agtagtatca actcaattgc 
     781 tgttaaatgg aagtctagca gaagaagaga tagtaattag atctgaaaat ttcacaaaca 
     841 atgctaaaat catcatagta catctaaacg aatctgtaga aattaattgt acaaggccta 
     901 acaacaatac aagaaaaggt atacatatag gaccaggaag agcattttat gcaacagaaa 
     961 taataggaga tataagacaa gcacattgta acattagtag agcaaaatgg aataaaactt 
    1021 taagtcagat agttggaaaa ttaagagaac aatttgagaa taaaacaata gtctttaatc 
    1081 aatcctcagg aggggaccca gaaattgtaa tgcacaattt taattgtgga ggggagtttt 
    1141 tctactgtaa tacaacacaa ctgtttaata gtacttggaa tgatactgca gggtcaagta 
    1201 acaatggaga aaatagcaca accatcacgc tcccatgcag aatgagacaa attataaaca 
    1261 tgtggcagga agtgggaaaa gcaatgtatg cccctcccat cagaggacca attaaatgtt 
    1321 cttcaaatat tacagggctg ctattaacaa gagatggtgg taagaacacg aacacgagcg 
    1381 agaatgagac tgagatcttc agacctgggg gaggagatat gagggacaat tggagaagtg 
    1441 aattatataa atataaagta gtaaaaattg aaccattagg aatagcaccc accaaggcaa 
    1501 agagaagagt ggtgcagaga gaaaaaagag cagtgggact aggagctatg ttccttgggt 
    1561 tcttgggagc agcaggaagc actatgggcg cagcgtcagt gacgctgacg gtacaggcca 
    1621 gacaattatt gtctggtata gtgcaacagc agaacaatct gctgaaggct attgaggcgc 
    1681 agcagcacct gttgcaactc acagtctggg gcatcaagca gctccaggca agaatcctgg 
    1741 ctgtggaaag atacctaaag gaccaacagc tcctggggat ttggggttgc tctggaaaac 
    1801 tcatttgcac cacttctgtg ccttggaata ctagttggag tgggaataga tctctgactg 
    1861 atatttggaa caacatgact tggatggagt gggaaagaga aattgacaat tacacaaact 
    1921 taatatactc cttaatttca gaatcgcaga accaacaaga caaaaatgaa aaagagttat 
    1981 tggaattgga taaatgggca agtttgtgga attggtttga cataacaaat tggctgtggt 
    2041 atataaaaat attcatcatg atagtaggag gcttggtagg gttaagaata gtttttactg 
    2101 tattttctat agtgaataga gttaggcagg gatattcacc actatcgttt cagacccacc 
    2161 tcccagctcc gaggggaccc gacaggcccg aaggaatcga agaagaaggt ggagagagag 
    2221 gcagagacag atccggacga ttagtgactg gattcttaga acttatctgg atcgatctga 
    2281 ggagcctgtg cctcttcagc taccaccgct tgagagactt actcttgatt gtaacgagga 
    2341 ttgtggaact tctgggacgc agggggtggg aagctctgaa atattggtgg aatctcctac 
    2401 agtattggat acaggaacta aagaatagtg ctgttagctt gctcaacgcc acagccatag 
    2461 cagtagctga ggggacagat agggttatag aagtattaca aagagctggt agagctcttc 
    2521 tccacatacc tagaagaata agacaggggg ccaaaagggc t
//
last modified: Tue May 31 10:56 2022


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