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LOCUS DQ296738 2549 bp RNA linear VRL 14-MAR-2006
DEFINITION HIV-1 clone 07201999_G8 from USA envelope glycoprotein (env) gene,
partial cds
ACCESSION DQ296738
VERSION DQ296738.1 GI:89277429
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2549)
Show all sequences for reference 1
AUTHORS Frost,S.D.W., Wrin,T., Smith,D.M., Kosakovsky Pond,S.L., Liu,Y.,
Paxinos,E., Chappey,C., Galovich,J., Beauchaine,J.,
Petropoulos,C.J., Little,S.J. and Richman,D.D.
TITLE Neutralizing antibody responses drive the evolution of human
immunodeficiency virus type 1 envelope during recent HIV infection
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 102 (51), 18514-18519 (2005)
PUBMED 16339909
REFERENCE 2 (bases 1 to 2549)
Show all sequences for reference 2
AUTHORS Frost,S.D.W., Wrin,T., Smith,D.M., Kosakovsky Pond,S.L., Liu,Y.,
Paxinos,E., Chappey,C., Galovich,J., Beauchaine,J.,
Petropoulos,C.J., Little,S.J. and Richman,D.D.
TITLE Direct Submission
JOURNAL Submitted (15-NOV-2005) Pathology, University of California, San
Diego, 9500 Gilman Drive, La Jolla, CA 92093-0679, USA
FEATURES Location/Qualifiers
source 1..2549
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="patient 050100839"
/db_xref="taxon:11676"
/clone="07201999_G8"
/country="USA"
/note="genotype: B"
gene <1..>2549
/gene="env"
CDS <1..>2549
/gene="env"
/codon_start="3"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="ABD66821.1"
/db_xref="GI:89277430"
/translation="VTEIKKSYQNLWKGGILLLWKWGTMLLGILMICNATEQLWVTVY
YGVPVWKEATTTLFCASDAKAYDTEVRNVWATHACVPTDPHPQEVVLGNVTENFNMWK
NDMVEQMHEDIISLWDASLKPCVKLTPLCVTLNCTDVNANNTNSSISMEGEIKNCSFN
ITTNMRDKVQKEYSLFYKLDVVPIDNNTNYRLISCNTSVITQACPKVTFEPIPIHYCT
PAGFAILKCNNKTFSGTGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEEEIVIRSENF
TNNAKIIIVHLNESVEINCTRPNNNTRKGIHIGPGRAFYATEIIGDIRQAYCNISRAK
WNKTLSQIVGKLREQFKNKTIVFNQSSGGDPEIVMHSFNCGGEFFYCNTTQLFNSTWN
DTAGSSNNGENSTTITLPCKIRQIINMWQEVGKAMYAPPIRGPIKCSSNITGLLLTRD
GGKHTNTSENETEIFRPGGGNMRDNWRSELYKYKVVKIEPLGIAPTKAKRRVVQREKR
AVGLGAMFLGFLGAAGSTMGAASVTLTVQARQLLSGIVQQQNNLLKAIEAQQHLLQLT
VWGIKQLQARILAVERYLKDQQLLGIWGCSGKLICTTSVPWNTSWSGNRSLTDIWNNM
TWMEWEREIDNYTNLIYSLILESQNQQDKNEKELLELDKWASLWNWFDITNWLWYIKI
FIMIVGGMVGLRIVFTVFSIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERGR
DRSGRLVNGFLELIWIDLRSLCLFSYHRLRDLLLIVTRIVELLGRRGWEALKYWWNLL
QYWIQELKNSAVSLLNATATAVAEGTDRVIEVLQRAGRALFHMPRRIRQGA"
BASE COUNT 883 a 437 c 605 g 624 t
ORIGIN
1 gagtgacgga gatcaagaag agttatcaaa acttgtggaa agggggcatc ttgctcttgt
61 ggaaatgggg caccatgctc cttgggatat taatgatttg taatgctaca gaacaattgt
121 gggtcacagt ctattatggg gtacctgtgt ggaaagaagc aaccaccact ttattttgtg
181 catcagatgc taaagcatat gatacagagg tacgtaatgt ttgggccaca catgcctgtg
241 tacccacaga cccccaccca caagaagtag tattaggaaa tgtgactgaa aattttaaca
301 tgtggaaaaa tgacatggta gaacagatgc atgaggatat aatcagttta tgggatgcaa
361 gcttaaagcc atgtgtaaaa ttaaccccac tctgtgttac tctaaattgc actgatgtga
421 atgctaataa caccaatagt agcatatcga tggagggaga aataaaaaac tgctctttca
481 atatcaccac aaacatgaga gataaggtgc agaaggaata ttcacttttt tataaacttg
541 atgtagtacc aatagataat aataccaact ataggttgat aagttgtaac acctcagtca
601 ttacccaggc ttgtccaaag gtaacctttg agccaatccc catacattat tgtaccccgg
661 ctggttttgc gattctaaag tgtaacaata aaacgttcag tggaacagga ccatgcaaaa
721 atgtcagcac agtacaatgt acacatggaa ttaagccagt agtatcaact caattgctgt
781 taaatggaag tctagcagaa gaagagatag taattagatc tgaaaatttc acaaacaatg
841 ctaaaatcat catagtacat ctgaacgaat ctgtagaaat taattgtaca aggcctaaca
901 acaatacaag aaaaggtata catataggac caggaagagc attttatgca acagaaataa
961 taggagatat aagacaagca tattgtaaca ttagtagagc aaaatggaat aaaactttaa
1021 gtcagatagt tggaaaatta agagaacaat ttaagaataa aacaatagtc tttaatcaat
1081 cctcaggagg ggacccagaa attgtaatgc acagttttaa ttgtggaggg gagtttttct
1141 actgtaatac aacacagctg tttaatagta cttggaatga tactgcaggg tcaagtaaca
1201 atggagaaaa tagcacaact atcacgctcc catgcaaaat aagacaaatt ataaacatgt
1261 ggcaggaagt aggaaaagca atgtatgccc ctcccatcag aggaccaatt aaatgttctt
1321 caaatattac agggctgcta ttaacaagag atggtggtaa gcacacgaac acgagcgaga
1381 atgagactga gatcttcaga cctgggggag gaaatatgag ggacaattgg agaagtgaat
1441 tatataaata taaagtagta aaaattgaac cattaggaat agcacccacc aaggcaaaga
1501 gaagagtggt gcagagagaa aaaagagcag tgggactagg agctatgttc cttgggttct
1561 tgggagcagc aggaagcact atgggcgcag cgtcagtgac gctgacggta caggccagac
1621 aattattgtc tggtatagtg caacagcaga acaatctgct gaaggctatt gaggcgcaac
1681 agcacctgtt gcaactcaca gtctggggca tcaagcagct ccaggcaaga atcctggctg
1741 tggaaagata cctaaaggac caacagctcc tggggatttg gggttgctct ggaaaactca
1801 tttgcaccac ttctgtgcct tggaatacta gttggagtgg gaatagatct ctgactgata
1861 tttggaacaa catgacttgg atggagtggg aaagagaaat tgacaattac actaacttaa
1921 tatactcctt aattttagaa tcgcagaacc aacaagacaa aaatgaaaaa gagttattgg
1981 aattggataa atgggcaagt ttgtggaatt ggtttgacat aacaaattgg ctgtggtata
2041 taaaaatatt catcatgata gtaggaggca tggtagggtt aagaatagtt tttactgtat
2101 tttctatagt gaatagagtt aggcagggat attcaccact atcgtttcag acccacctcc
2161 cagctccgag gggacccgac aggcccgaag gaatcgaaga agaaggtgga gagagaggca
2221 gagacagatc cggacgatta gtgaatggat tcttagaact tatctggatc gatctgagga
2281 gcctgtgcct cttcagctac caccgcttga gagacttact cttgattgta acgaggattg
2341 tggaacttct gggacgcagg gggtgggaag ctctgaaata ttggtggaat ctcctacagt
2401 attggataca ggaactaaag aatagtgctg ttagcttgct caacgccaca gccacagcag
2461 tagctgaggg gacagatagg gttatagaag tattacaaag agctggtaga gctcttttcc
2521 acatgcctag aagaataagg cagggggcc
//
last modified: Tue May 31 10:56 2022