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LOCUS DQ296726 2561 bp RNA linear VRL 14-MAR-2006
DEFINITION HIV-1 clone 06041999_F7 from USA envelope glycoprotein (env) gene,
partial cds
ACCESSION DQ296726
VERSION DQ296726.1 GI:89277405
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2561)
Show all sequences for reference 1
AUTHORS Frost,S.D.W., Wrin,T., Smith,D.M., Kosakovsky Pond,S.L., Liu,Y.,
Paxinos,E., Chappey,C., Galovich,J., Beauchaine,J.,
Petropoulos,C.J., Little,S.J. and Richman,D.D.
TITLE Neutralizing antibody responses drive the evolution of human
immunodeficiency virus type 1 envelope during recent HIV infection
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 102 (51), 18514-18519 (2005)
PUBMED 16339909
REFERENCE 2 (bases 1 to 2561)
Show all sequences for reference 2
AUTHORS Frost,S.D.W., Wrin,T., Smith,D.M., Kosakovsky Pond,S.L., Liu,Y.,
Paxinos,E., Chappey,C., Galovich,J., Beauchaine,J.,
Petropoulos,C.J., Little,S.J. and Richman,D.D.
TITLE Direct Submission
JOURNAL Submitted (15-NOV-2005) Pathology, University of California, San
Diego, 9500 Gilman Drive, La Jolla, CA 92093-0679, USA
FEATURES Location/Qualifiers
source 1..2561
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="patient 050100839"
/db_xref="taxon:11676"
/clone="06041999_F7"
/country="USA"
/note="genotype: B"
gene <1..>2561
/gene="env"
CDS <1..>2561
/gene="env"
/codon_start="3"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="ABD66809.1"
/db_xref="GI:89277406"
/translation="VTEIKKSYQNSWKGGILLLWKWGTMLLGILMICNATEQLWATVY
YGVPVWKEATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEVVLGNVTENFNMWK
NDMVEQMHEDIISLWDASLKPCVKLTPLCVTLNCTDVNANNATNSSISMEGEIKNCSF
NITTNMRDKVQKEYSLFYKLDVVPIDNNTNYRLISCNTSVITQACPKVTFEPIPIHYC
TPAGFAILKCNNKTFSGTGPCKNVSTVQCTHGIKPVVSTQLMLNGSLAEEEIVIRSEN
FTNNAKIIIVHLNESVEINCTRPNNNTRKGIHIGPGRAFYATEIIGDIRQAYCNISRA
KWNKTLSQIVGKLREQFENKTIVFNQSSGGDPEIVMHSFNCGGEFFYCNTTQLFNSTW
NDTAGSSNNGENSTTITLPCRIRQIINMWQEVGKAMYAPPIRGPIKCSSNITGLLLTR
DGGKNTNTSENETEIFRPGGGDMRDNWRSELYKYKVVKIEPLGIAPTKAKRRVVQREK
RAVGLGAMFLGFLGAAGSTMGAASVTLTVQARQLLSGIVQQQNNLLKAIEAQQHLLQL
TVWGIKQLQARILAVERYLKDQQLLGIWGCSGKLICTTSVPWNTSWSGNRSLTDIWNN
MTWMEWEREIDNYTNLIYSLILESQNQQDKNEKELLELDKWASLWNWFDITNWLWYIK
IFIMIVGGLVGLRIVFTVFSIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERG
RDRSGRLVNGFLELIWIDLRSLCLFSYHRLRDLLLIVTRIVEILGRRGWEALKYWWNL
LQYWIQELKNSAVSLLNATATAVAEGTDRVIEVLQRAGRALFNIPRRIRQGAERA"
BASE COUNT 893 a 439 c 608 g 621 t
ORIGIN
1 gagtgacgga gatcaagaag agttatcaaa actcgtggaa agggggcatc ttgctcttgt
61 ggaaatgggg caccatgctc cttgggatat taatgatttg taatgctaca gaacaattgt
121 gggccacagt ctattatggg gtacctgtgt ggaaagaagc aaccaccact ttattttgtg
181 catcagatgc taaagcatat gatacagagg tacataatgt ttgggccaca catgcctgtg
241 tacccacaga ccccaaccca caagaagtag tattaggaaa tgtgactgaa aattttaaca
301 tgtggaaaaa tgacatggta gaacagatgc atgaggatat aatcagttta tgggatgcaa
361 gcttaaagcc atgtgtaaaa ttaaccccac tctgtgttac tctaaattgc actgatgtga
421 atgctaataa tgccaccaat agtagcatat cgatggaggg agaaataaaa aactgctctt
481 tcaatatcac cacaaacatg agagataagg tgcagaaaga atattcactt ttttataaac
541 ttgatgtagt accaatagat aataatacca actataggtt gataagttgt aacacctcag
601 tcattaccca ggcttgtcca aaggtaacct ttgagccaat ccccatacat tattgtaccc
661 cggctggttt tgcgattcta aagtgtaaca ataaaacgtt cagtggaaca ggaccatgca
721 aaaatgtcag cacagtacaa tgtacacatg gaattaagcc agtagtatca actcaattga
781 tgttaaatgg aagtctagca gaagaagaga tagtaattag atctgaaaat ttcacaaaca
841 atgctaaaat catcatagta catctgaacg aatctgtaga aattaattgt acaaggccta
901 acaacaatac aagaaaaggt atacatatag gaccaggaag agcattttat gcaacagaaa
961 taataggaga tataagacaa gcatattgta acattagtag agcaaaatgg aataaaactt
1021 taagtcagat agttggaaaa ttaagagaac aatttgagaa taaaacaata gtctttaatc
1081 aatcctcagg aggggaccca gaaattgtaa tgcacagttt taattgtgga ggggagtttt
1141 tctactgtaa tacaacacaa ctgtttaata gtacttggaa tgatactgca gggtcaagta
1201 acaatggaga aaatagcaca accatcacgc tcccatgcag aataagacaa attataaaca
1261 tgtggcagga agtaggaaaa gcaatgtatg cccctcccat cagaggacca attaaatgtt
1321 cttcaaatat tacagggctg ctattaacaa gagatggtgg taagaacacg aacacgagcg
1381 agaatgagac tgagatcttc agacctgggg gaggagatat gagggacaat tggagaagtg
1441 aattatataa atataaagta gtaaaaattg aaccattagg aatagcaccc accaaggcaa
1501 agagaagagt ggtgcagaga gaaaaaagag cagtgggact aggagctatg ttccttgggt
1561 tcttgggagc agcaggaagc actatgggcg cagcgtcagt gacgctgacg gtacaggcca
1621 gacaattatt gtctggtata gtgcaacagc agaacaatct gctgaaggct attgaggcgc
1681 aacagcacct gttgcaactc acagtctggg gcatcaagca gctccaggca agaatcctgg
1741 ctgtggaaag atacctaaag gaccaacagc tcctggggat ttggggttgc tctggaaaac
1801 tcatttgcac cacttctgtg ccttggaata ctagttggag tgggaataga tctctgactg
1861 atatttggaa caacatgacc tggatggagt gggaaagaga aattgacaat tacacaaact
1921 taatatactc cctaatttta gaatcgcaga accaacaaga caaaaatgaa aaagagttat
1981 tggaattgga taaatgggca agtttgtgga attggtttga cataacaaat tggctgtggt
2041 atataaaaat attcatcatg atagtaggag gcttggtagg gttaagaata gtttttactg
2101 tattttctat agtgaataga gttaggcagg gatattcacc actatcgttt cagacccacc
2161 tcccagctcc gaggggaccc gacaggcccg aaggaatcga agaagaaggt ggagagagag
2221 gcagagacag atccggacga ttagtgaatg gattcttaga acttatctgg atcgatctga
2281 ggagcctgtg cctcttcagc taccaccgct tgagagactt actcttgatt gtaacgagga
2341 ttgtggaaat tctgggacgc agggggtggg aagctctgaa atattggtgg aatctcctac
2401 agtattggat acaggaacta aagaatagtg ctgttagctt gctcaacgcc acagccacag
2461 cagtagctga ggggacagat agggttatag aagtattaca aagagctggt agagctcttt
2521 tcaacatacc tagaagaata agacaggggg ccgaaagggc t
//
last modified: Tue May 31 10:56 2022