View NCBI entry Download GenBank file Graphics View Download GFF3 File
LOCUS DQ208480 2541 bp DNA linear VRL 03-JAN-2006
DEFINITION HIV-1 isolate BL035.W6M.ENV.C1 from Kenya envelope glycoprotein
(env) gene, complete cds
ACCESSION DQ208480
VERSION DQ208480.1 GI:77025242
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2541)
Show all sequences for reference 1
AUTHORS Wu,X., Parast,A.B., Richardson,B.A., Nduati,R., John-Stewart,G.,
Mbori-Ngacha,D., Rainwater,S.M. and Overbaugh,J.
TITLE Neutralization escape variants of human immunodeficiency virus type
1 are transmitted from mother to infant
JOURNAL J. Virol. 80 (2), 835-844 (2006)
PUBMED 16378985
REFERENCE 2 (bases 1 to 2541)
Show all sequences for reference 2
AUTHORS Wu,X., Parast,A.B., Richardson,B.A., Nduati,R., John-Stewart,G.,
Mbori-Ngacha,D., Rainwater,S.M.J. and Overbaugh,J.
TITLE Direct Submission
JOURNAL Submitted (19-SEP-2005) Human Biology, Fred Hutchinson Cancer
Research Center, 1100 Fairview Ave N., Seattle, WA 98109, USA
FEATURES Location/Qualifiers
source 1..2541
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="BL035.W6M.ENV.C1"
/isolation_source="infant"
/db_xref="taxon:11676"
/country="Kenya"
/note="subtype: D/A recombinant"
gene 1..2541
/gene="env"
CDS 1..2541
/gene="env"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="ABA61538.1"
/db_xref="GI:77025243"
/translation="MKVMGIQKNCQRLWKWGTMLLGMLMICSATEQLWVTVYYGVPVW
KEATTTLFCASDAKAHKPEMHNIWATHACVPTDPNPQEIHLKDVKEDFNMWKNNMVEQ
MHEDIISLWDQSLKPCVKLTPLCVTLNCTDYNSTSVMKKCSFNITTEVRDRQKKVHAL
FYRLDVVQINESNSSSNSSYNEYRLINCNTSAITQACPKVSFEPIPIHYCAPAGFAIL
KCKDEEFNGTGLCKNVSSVQCTHGIKPVVSTQLLLNGSLAEKEVKIRSQNITNNARTI
IVQLDKPVEINCTRPNNNTRKSIRIGPGQAFFATGDIVGDIRQAHCNVSGKKWNETLQ
KISTQLRKHFGNRTIIFANSSGGDPEITTHSFNCGGEFFYCNTSELFNSVWENNSTGN
NSAGKNESIITLPCRIKQIINMWQGVGRAMYAPPIEGHINCSSNITGLLLARDGGINN
NSHDNETFRPGGGDMRDNWRSELYKYKVVKIEPLGLAPTKAKRRVVEREKRAIGLGAM
FLGFLGAAGSTMGAASLALTGQARQLMSGIVQQQNNLLGAIDAQQHLLQLTVWGIKQL
QARVLAVESYLKDQQLLGIWGCSGRHICTTNVPWNSSWSNRSLDKIWENMTWQEWERE
IDNYTGLIYSLIEESQTQQEKNEKDLLELDKWASLWNWFSITQWLWYIKIFIMIVGGL
IGLRIVFAVLSIVNRVRQGYSPLSFQTLLPTSRGPDRPEGIEEEGGERGRDKSIRLVN
GFSALIWDDLRNLCLFSYHHLRDLILIAARIVELLGRRGWEAIKYLWNLLKYWTQELK
NSAISLVDTIAIAVAGWTDRAIEILQGIGRAFLHIPRRIRQGLERALL"
BASE COUNT 896 a 436 c 599 g 610 t
ORIGIN
1 atgaaagtga tggggataca gaagaattgt cagcgcttgt ggaaatgggg caccatgctc
61 cttggaatgt taatgatatg tagtgctaca gaacagttgt gggtcacagt ttattatggg
121 gtacctgtgt ggaaagaagc aaccactact ttattctgtg catcggatgc taaagcacat
181 aagccagaaa tgcataatat ctgggcaaca catgcctgtg tacccacaga ccccaaccca
241 caagaaatac atttgaaaga tgtgaaagaa gattttaaca tgtggaaaaa taacatggtg
301 gagcaaatgc atgaggatat aatcagttta tgggatcaaa gcctaaaacc atgtgtaaaa
361 ttaaccccac tctgtgtcac tttaaactgc actgactata acagtaccag tgtaatgaaa
421 aaatgctctt tcaatataac cacagaagta agagataggc agaagaaagt acatgcactt
481 ttttatagac ttgatgtagt acaaattaat gaaagtaata gtagtagtaa tagtagttac
541 aatgagtata gattaataaa ttgtaatacc tcagccatta cacaggcgtg cccaaaggta
601 tcctttgagc caattcccat acattattgt gctccagctg gttttgcgat cctcaagtgt
661 aaggatgagg agttcaatgg aacagggcta tgcaaaaatg tcagctcagt ccaatgcaca
721 catggaatca agccagtagt atcaactcaa ctgctgttaa atggcagtct agcagaaaaa
781 gaggtaaaaa ttagatctca aaatatcaca aacaatgcca gaactataat agtacaactt
841 gacaagcctg tggaaattaa ttgtaccaga cctaacaaca atacaagaaa aagtatacgt
901 ataggaccag gacaagcatt ctttgcaaca ggtgacatag taggagacat aagacaagca
961 cattgtaatg ttagtggaaa gaaatggaat gaaactttac aaaagataag tacacaatta
1021 agaaaacact ttgggaacag gacaataata tttgctaact cctcgggagg ggacccagaa
1081 atcacaacac acagctttaa ttgtggaggg gaatttttct actgtaatac atcagaactg
1141 tttaatagtg tatgggaaaa taatagtaca ggaaacaata gtgcagggaa aaatgagagt
1201 ataatcacac tcccgtgcag aataaaacaa attataaaca tgtggcaggg agtaggacga
1261 gcaatgtatg cccctcccat tgaaggacac attaactgtt catcaaatat tacaggacta
1321 ttgttggcaa gagatggtgg tataaataat aatagtcatg ataatgagac cttcagacct
1381 ggaggaggag atatgagaga caattggaga agtgaattat acaaatataa agtagtaaaa
1441 attgaaccac taggtctagc acccaccaag gcaaagagaa gggtggtgga aagagaaaaa
1501 agagcaatag gactaggagc tatgttcctt gggttcttgg gagcagcagg aagcacgatg
1561 ggcgcagcgt cactggcgct gacgggacag gccagacagt taatgtctgg tatagtgcaa
1621 cagcaaaaca atttgctggg ggctatagat gcgcaacagc atctgttgca actcacagtc
1681 tggggcatta aacagctcca ggcaagagtc ctggctgtgg aaagctacct aaaggatcaa
1741 cagctcctag gaatttgggg ttgctctgga agacacattt gcaccactaa tgtgccctgg
1801 aactctagct ggagtaatag atctctagat aagatttggg aaaacatgac ctggcaggag
1861 tgggaaagag aaattgacaa ttacacaggg ttaatataca gcttaattga agaatcgcaa
1921 acccagcaag aaaagaatga aaaagatcta ttagaattgg acaaatgggc aagtttgtgg
1981 aattggttta gcataacaca atggctgtgg tatataaaaa tattcataat gatagtagga
2041 ggcttgatag gtttaagaat agtttttgct gtgctttcta tagtaaatag agttaggcag
2101 ggatattcac ctctgtcgtt tcagaccctc ctcccaacct cgaggggacc agacaggccc
2161 gaaggaatag aagaagaagg tggagagcga ggcagagaca aatccattcg attggtgaac
2221 ggattctcag cacttatctg ggacgatctg aggaacctgt gcctcttcag ctaccaccac
2281 ttgagagact taatcttaat tgcagcgagg attgtggaac ttctgggacg cagggggtgg
2341 gaagccatca aatatctgtg gaatctcctg aagtattgga ctcaggaact aaagaatagt
2401 gctattagct tggttgatac catagcaata gcagtagctg gctggacaga tagggctata
2461 gaaatattgc aaggaattgg tagagctttt ctccacatac ctagaagaat tagacaaggc
2521 ttagaaaggg ctttgctata a
//
last modified: Tue May 31 10:56 2022