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LOCUS	    DQ113041		    1273 bp    RNA     linear	VRL 15-AUG-2006
DEFINITION  HIV-1 isolate CB_144 from Cuba pol protein (pol) gene, partial cds
ACCESSION   DQ113041
VERSION     DQ113041.1 GI:73810414
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1273)
            Show all sequences for reference 1
  AUTHORS   Pérez,L., Thomson,M.M., Bleda,M.J., Aragonés,C., González,Z.,
	    Pérez,J., Sierra,M., Casado,G., Delgado,E. and Nájera,R.
  TITLE     HIV Type 1 molecular epidemiology in cuba: high genetic diversity,
	    frequent mosaicism, and recent expansion of BG intersubtype
	    recombinant forms.
  JOURNAL   AIDS Res. Hum. Retroviruses 22 (8), 724-33 (2006)
  PUBMED    16910827
REFERENCE   2 (bases 1 to 1273)
            Show all sequences for reference 2
  AUTHORS   Perez,L., Thomson,M.M., Aragones,C., Gonzalez,Z., Casado,G.,
	    Sierra,M., Delgado,E., Perez,J. and Najera,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-JUN-2005) Centro Nacional de Microbiologia, Instituto
	    de Salud Carlos III, Ctra. Majadahonda-Pozuelo, Km. 2, Majadahonda,
	    Madrid 28220, Spain
FEATURES             Location/Qualifiers
     source	     1..1273
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="CB_144"
		     /db_xref="taxon:11676"
		     /country="Cuba"
     gene	     <1..>1273
		     /gene="pol"
     CDS	     <1..>1273
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AAZ86169.1"
		     /db_xref="GI:73810415"
		     /translation="PQITLWQRPLVAIKIGGQLXEALLDTGADDTVLEEIDLPGKWRP
		     KMIGGIGGFIKVRQYDQIPIEICGQKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICTDMEKEGKISRIGPENPYNTPIF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLRKKKSVTVLDVGDAYFSVP
		     LDEDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQASMTKILEPFRKQNPE
		     IVIYQYVDDLYVGSDLEIGQHRXKIEELREHLLRWGFTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQPIQLPEKESWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGAKALTEVV
		     PLTEEAELELAENREILREPVHGVYYDPSKDL"
BASE COUNT	493 a	 208 c	  272 g    293 t      7 other
ORIGIN
       1 cctcaaatca ctctttggca gcgacccctt gtcgcaataa agataggggg acagctaarg 
      61 gaagctctat tagatacagg agctgatgat acagttttag aagaaataga tttgccagga 
     121 aaatggagac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acagtatgat 
     181 caaataccca tagaaatctg tggacagaaa gctataggta cagtattagt aggacctaca 
     241 cctgtcaaca taattggaag aaatttgttg actcagattg gctgcacttt aaattttcca 
     301 attagcccta ttgaaactgt accagtaaaa ttaaagccag ggatggacgg cccaaaagtt 
     361 aaacaatggc cattgacaga agaraaaata aaagcattaa cagaaatttg tacagatatg 
     421 gaaaaggaag gaaaaatttc aagaattggg cctgaaaayc catataatac tccaatattt 
     481 gccataaaga agaaggacag tactaagtgg agaaaattag tagatttcag agaacttaat 
     541 aagagaaccc aagacttctg ggaagttcaa ttaggaatac cacaccctgc agggttaagg 
     601 aagaaaaaat cagtaacagt attggatgta ggtgatgcat atttttcagt tcccttagat 
     661 gaagacttta gaaagtatac tgcctttacc atacctagta caaacaatga gacaccaggg 
     721 attagatatc agtacaatgt gctkccacag ggatggaaag gatcaccggc aatattccaa 
     781 gctagcatga caaaaatcct agagccyttt agaaaacaaa atccagaaat agttatctat 
     841 caatatgtgg atgacttgta tgtaggatct gacttagaaa tagggcagca tagarcaaaa 
     901 atagaggaat taagggaaca tttrttgagg tggggattta ccacaccaga caaaaaacac 
     961 cagaaagaac ctccattcct ttggatgggt tatgaactcc atcctgataa atggacagta 
    1021 cagcctatac aactgccaga aaaagaaagc tggactgtca atgatataca gaagttagtg 
    1081 ggaaaattaa attgggcaag ccaaatttat ccaggaatta aagtaagaca gctatgtaag 
    1141 ctccttaggg gagctaaagc actaacagaa gtagtaccac taacagaaga agcagagtta 
    1201 gaactggcag aaaacaggga gattctaaga gaaccagtac atggagtgta ttatgaccca 
    1261 tcaaaagatt taa
//
last modified: Tue May 31 10:56 2022


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