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LOCUS DQ113041 1273 bp RNA linear VRL 15-AUG-2006
DEFINITION HIV-1 isolate CB_144 from Cuba pol protein (pol) gene, partial cds
ACCESSION DQ113041
VERSION DQ113041.1 GI:73810414
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1273)
Show all sequences for reference 1
AUTHORS Pérez,L., Thomson,M.M., Bleda,M.J., Aragonés,C., González,Z.,
Pérez,J., Sierra,M., Casado,G., Delgado,E. and Nájera,R.
TITLE HIV Type 1 molecular epidemiology in cuba: high genetic diversity,
frequent mosaicism, and recent expansion of BG intersubtype
recombinant forms.
JOURNAL AIDS Res. Hum. Retroviruses 22 (8), 724-33 (2006)
PUBMED 16910827
REFERENCE 2 (bases 1 to 1273)
Show all sequences for reference 2
AUTHORS Perez,L., Thomson,M.M., Aragones,C., Gonzalez,Z., Casado,G.,
Sierra,M., Delgado,E., Perez,J. and Najera,R.
TITLE Direct Submission
JOURNAL Submitted (30-JUN-2005) Centro Nacional de Microbiologia, Instituto
de Salud Carlos III, Ctra. Majadahonda-Pozuelo, Km. 2, Majadahonda,
Madrid 28220, Spain
FEATURES Location/Qualifiers
source 1..1273
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="CB_144"
/db_xref="taxon:11676"
/country="Cuba"
gene <1..>1273
/gene="pol"
CDS <1..>1273
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AAZ86169.1"
/db_xref="GI:73810415"
/translation="PQITLWQRPLVAIKIGGQLXEALLDTGADDTVLEEIDLPGKWRP
KMIGGIGGFIKVRQYDQIPIEICGQKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICTDMEKEGKISRIGPENPYNTPIF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLRKKKSVTVLDVGDAYFSVP
LDEDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQASMTKILEPFRKQNPE
IVIYQYVDDLYVGSDLEIGQHRXKIEELREHLLRWGFTTPDKKHQKEPPFLWMGYELH
PDKWTVQPIQLPEKESWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGAKALTEVV
PLTEEAELELAENREILREPVHGVYYDPSKDL"
BASE COUNT 493 a 208 c 272 g 293 t 7 other
ORIGIN
1 cctcaaatca ctctttggca gcgacccctt gtcgcaataa agataggggg acagctaarg
61 gaagctctat tagatacagg agctgatgat acagttttag aagaaataga tttgccagga
121 aaatggagac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acagtatgat
181 caaataccca tagaaatctg tggacagaaa gctataggta cagtattagt aggacctaca
241 cctgtcaaca taattggaag aaatttgttg actcagattg gctgcacttt aaattttcca
301 attagcccta ttgaaactgt accagtaaaa ttaaagccag ggatggacgg cccaaaagtt
361 aaacaatggc cattgacaga agaraaaata aaagcattaa cagaaatttg tacagatatg
421 gaaaaggaag gaaaaatttc aagaattggg cctgaaaayc catataatac tccaatattt
481 gccataaaga agaaggacag tactaagtgg agaaaattag tagatttcag agaacttaat
541 aagagaaccc aagacttctg ggaagttcaa ttaggaatac cacaccctgc agggttaagg
601 aagaaaaaat cagtaacagt attggatgta ggtgatgcat atttttcagt tcccttagat
661 gaagacttta gaaagtatac tgcctttacc atacctagta caaacaatga gacaccaggg
721 attagatatc agtacaatgt gctkccacag ggatggaaag gatcaccggc aatattccaa
781 gctagcatga caaaaatcct agagccyttt agaaaacaaa atccagaaat agttatctat
841 caatatgtgg atgacttgta tgtaggatct gacttagaaa tagggcagca tagarcaaaa
901 atagaggaat taagggaaca tttrttgagg tggggattta ccacaccaga caaaaaacac
961 cagaaagaac ctccattcct ttggatgggt tatgaactcc atcctgataa atggacagta
1021 cagcctatac aactgccaga aaaagaaagc tggactgtca atgatataca gaagttagtg
1081 ggaaaattaa attgggcaag ccaaatttat ccaggaatta aagtaagaca gctatgtaag
1141 ctccttaggg gagctaaagc actaacagaa gtagtaccac taacagaaga agcagagtta
1201 gaactggcag aaaacaggga gattctaaga gaaccagtac atggagtgta ttatgaccca
1261 tcaaaagatt taa
//
last modified: Tue May 31 10:56 2022