View NCBI entry Download GenBank file Graphics View Download GFF3 File
LOCUS DQ113028 1280 bp RNA linear VRL 15-AUG-2006
DEFINITION HIV-1 isolate CB_120 from Cuba pol protein (pol) gene, partial cds
ACCESSION DQ113028
VERSION DQ113028.1 GI:73810388
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1280)
Show all sequences for reference 1
AUTHORS Pérez,L., Thomson,M.M., Bleda,M.J., Aragonés,C., González,Z.,
Pérez,J., Sierra,M., Casado,G., Delgado,E. and Nájera,R.
TITLE HIV Type 1 molecular epidemiology in cuba: high genetic diversity,
frequent mosaicism, and recent expansion of BG intersubtype
recombinant forms.
JOURNAL AIDS Res. Hum. Retroviruses 22 (8), 724-33 (2006)
PUBMED 16910827
REFERENCE 2 (bases 1 to 1280)
Show all sequences for reference 2
AUTHORS Perez,L., Thomson,M.M., Aragones,C., Gonzalez,Z., Casado,G.,
Sierra,M., Delgado,E., Perez,J. and Najera,R.
TITLE Direct Submission
JOURNAL Submitted (30-JUN-2005) Centro Nacional de Microbiologia, Instituto
de Salud Carlos III, Ctra. Majadahonda-Pozuelo, Km. 2, Majadahonda,
Madrid 28220, Spain
FEATURES Location/Qualifiers
source 1..1280
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="CB_120"
/db_xref="taxon:11676"
/country="Cuba"
gene <1..>1280
/gene="pol"
CDS <1..>1280
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AAZ86156.1"
/db_xref="GI:73810389"
/translation="PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEDINLPGKWRP
KMIGGIGGFIKVRQYDQIPIEICGQKAVGTILVGPTPVNIIGRNLLTQLGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICTEMEKEGKISKIGPENPYNTPIF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDKEFRKYTAFTIPSINNETPGTRYQYNVLPQGWKGSPAIFQSSMTKILDPFRKQNPE
IVIYQYMDDLYVGSDLEIGQHRAKIEELREHLLRWGFTTPDKKHQKEPPFLWMGYELH
PDKWTVQPIKLPEKESWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGAKALTEVI
TLTEEAELELAENREILKEPVHGVYYDPSKDLIA"
BASE COUNT 512 a 210 c 269 g 289 t
ORIGIN
1 cctcaaatca ctctttggca acgacccctt gtcacaataa agataggggg acagctaaag
61 gaagctctac tagatacagg agcagatgat acagtattag aagacataaa tttgccagga
121 aaatggagac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acagtatgat
181 caaataccca tagaaatctg tggacagaaa gctgtaggta caatattagt agggcctaca
241 cctgtcaaca taattggaag aaatttgttg actcagcttg gctgcacttt aaattttcca
301 attagcccta ttgaaactgt accagtaaaa ttaaagccag ggatggatgg cccaaaagtg
361 aaacaatggc cattgacaga agaaaaaata aaagcattaa cagaaatttg tacagagatg
421 gaaaaagaag gaaaaatttc aaaaattggg cctgagaatc catataatac tccaatattt
481 gccataaaga aaaaagacag tactaaatgg agaaaattag tagattttag agaacttaat
541 aagagaaccc aggacttctg ggaggttcaa ttaggaatac cacatcctgc agggctaaag
601 aagaaaaaat cagtaacagt attggatgta ggtgatgcat atttttcagt tcccttagat
661 aaagaattta gaaagtatac cgcatttacc atacccagta taaacaatga aacaccaggg
721 actagatatc agtataatgt gcttccacag ggatggaaag gatcaccggc aatatttcaa
781 agtagcatga caaaaatcct agatcccttt agaaaacaaa atccagaaat agttatctat
841 caatacatgg atgatttgta tgtaggatct gacttagaaa tagggcagca tagagcaaaa
901 atagaggaat taagggaaca tctgttgagg tggggattta ccacaccaga caaaaaacat
961 cagaaagaac ctccgttcct ttggatgggt tatgaactcc atcccgataa gtggacagta
1021 cagcctataa aactgccaga aaaagaaagc tggactgtca atgacataca gaagttagtg
1081 ggaaaactaa attgggcgag ccagatctat gcaggaatta aagtaaaaca gttatgtaaa
1141 ctccttaggg gagccaaagc actaacagaa gtaataacat taacagaaga agcagaatta
1201 gaactggcag aaaacaggga aattctaaaa gaaccagtgc atggagtgta ctatgaccca
1261 tcaaaagact taatagcaga
//
last modified: Tue May 31 10:56 2022