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LOCUS DQ112991 1233 bp RNA linear VRL 15-AUG-2006
DEFINITION HIV-1 isolate CB_054 from Cuba pol protein (pol) gene, partial cds
ACCESSION DQ112991
VERSION DQ112991.1 GI:73810314
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1233)
Show all sequences for reference 1
AUTHORS Pérez,L., Thomson,M.M., Bleda,M.J., Aragonés,C., González,Z.,
Pérez,J., Sierra,M., Casado,G., Delgado,E. and Nájera,R.
TITLE HIV Type 1 molecular epidemiology in cuba: high genetic diversity,
frequent mosaicism, and recent expansion of BG intersubtype
recombinant forms.
JOURNAL AIDS Res. Hum. Retroviruses 22 (8), 724-33 (2006)
PUBMED 16910827
REFERENCE 2 (bases 1 to 1233)
Show all sequences for reference 2
AUTHORS Perez,L., Thomson,M.M., Aragones,C., Gonzalez,Z., Casado,G.,
Sierra,M., Delgado,E., Perez,J. and Najera,R.
TITLE Direct Submission
JOURNAL Submitted (30-JUN-2005) Centro Nacional de Microbiologia, Instituto
de Salud Carlos III, Ctra. Majadahonda-Pozuelo, Km. 2, Majadahonda,
Madrid 28220, Spain
FEATURES Location/Qualifiers
source 1..1233
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="CB_054"
/db_xref="taxon:11676"
/country="Cuba"
gene <1..>1233
/gene="pol"
CDS <1..>1233
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AAZ86119.1"
/db_xref="GI:73810315"
/translation="PQITLWQRPIVTIKXGGQLIEALLDTGADDTVLEGINLPGRWKP
KIIGGIGGFIKVRQYEQIPIEICGHKVLSTVLVGPTPVNVVGRNLMTQLGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICXELEQDGKISKIGPENPYNTPVF
AIKKKDSTKWRKIVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIP
LDEDFRKYTAFTIPSINNETPGVRYQYNVLPQGWKGSPAIFQYSMTKILEPFRKQNPE
IVIYQYVDDLYVGSDLEIGQHRIKIEELRQYLWRWGFYTPDKKHQKEPPFRWMGYELH
PDKWTVQPIKLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKSLTEVV
PLTEEAELELAENREILKE"
BASE COUNT 491 a 201 c 259 g 280 t 2 other
ORIGIN
1 cctcagatca ctctttggca acgaccaata gtcacaataa agrtaggggg gcaactaata
61 gaagctctat tagatacagg agcagatgat acagtattag aagggataaa tttgccagga
121 agatggaaac caaaaataat agggggaatt ggaggtttta tcaaagtaag acagtacgaa
181 cagataccca tagaaatctg tggacataaa gttctaagta cagtattagt aggacctaca
241 cctgtcaacg tagttggaag aaatctgatg actcagcttg gctgcacttt aaattttccc
301 attagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaaagtt
361 aagcaatggc cattgacaga agaaaaaata aaagcattag tagaaatttg trcagaattg
421 gaacaggacg gaaaaatttc aaaaattggg cctgaaaatc catacaatac tccagtattt
481 gccataaaga aaaaagacag cacgaaatgg agaaaaatag tagacttcag agaacttaat
541 aaaagaactc aagacttctg ggaagttcaa ttaggaatac cacatcctgc aggtttaaaa
601 aagaaaaaat cagtaacagt actggatgtg ggtgatgcat atttttcaat tcccttagat
661 gaagacttca ggaagtatac tgcatttact atacctagta taaacaatga gacaccagga
721 gttagatatc agtacaatgt gcttccacag ggatggaaag gatcaccagc aatattccaa
781 tatagcatga caaaaatctt agagcctttt agaaaacaaa atccagaaat agttatatac
841 caatacgtgg atgatttgta tgtaggatct gacttagaaa tagggcagca tagaataaaa
901 atagaagaac tgagacaata tctgtggagg tggggatttt acacaccaga caaaaaacat
961 cagaaagaac ctccattccg ttggatgggc tatgaactcc atcctgataa atggacagta
1021 cagcctataa agctgccaga aaaggacagc tggactgtca atgacataca gaaattagtg
1081 ggaaaattga attgggcaag ccaaatatat gcagggatta aagtaaggca attatgcaaa
1141 ctccttaggg gaaccaaatc attaacagaa gtagtaccac taacagaaga agcagagcta
1201 gaactggcag aaaacaggga gattctaaaa gaa
//
last modified: Tue May 31 10:56 2022