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LOCUS DQ112985 1274 bp RNA linear VRL 15-AUG-2006
DEFINITION HIV-1 isolate CB_045 from Cuba pol protein (pol) gene, partial cds
ACCESSION DQ112985
VERSION DQ112985.1 GI:73810302
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1274)
Show all sequences for reference 1
AUTHORS Pérez,L., Thomson,M.M., Bleda,M.J., Aragonés,C., González,Z.,
Pérez,J., Sierra,M., Casado,G., Delgado,E. and Nájera,R.
TITLE HIV Type 1 molecular epidemiology in cuba: high genetic diversity,
frequent mosaicism, and recent expansion of BG intersubtype
recombinant forms.
JOURNAL AIDS Res. Hum. Retroviruses 22 (8), 724-33 (2006)
PUBMED 16910827
REFERENCE 2 (bases 1 to 1274)
Show all sequences for reference 2
AUTHORS Perez,L., Thomson,M.M., Aragones,C., Gonzalez,Z., Casado,G.,
Sierra,M., Delgado,E., Perez,J. and Najera,R.
TITLE Direct Submission
JOURNAL Submitted (30-JUN-2005) Centro Nacional de Microbiologia, Instituto
de Salud Carlos III, Ctra. Majadahonda-Pozuelo, Km. 2, Majadahonda,
Madrid 28220, Spain
FEATURES Location/Qualifiers
source 1..1274
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="CB_045"
/db_xref="taxon:11676"
/country="Cuba"
gene <1..>1274
/gene="pol"
CDS <1..>1274
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AAZ86113.1"
/db_xref="GI:73810303"
/translation="PQITLWQRPVVTVKIGGQLKEALLDTGADDTVLEDINLPGKWKP
KMIGGIGGFIKVRQYDQILIEICGKKAIGTVLVGPTPVNIIGRNMLTQIGCTLNFPIS
PIETVPVTLKPGMDGPKVKQWPLTEEKIKALTEICDEMEKEGKISKIGPENPYNTPVF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRLKNPD
IVIYQYMDDLYVGSDLEIGQHRAKVEDLRAHLLXWGLYTPDKKHQKEPPFLWMGYELH
PDKWTVQPIQLPDKDSWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLRGAKALTDIV
PLTEEAELELAENREILKEPVHGAYYDPSKDLV"
BASE COUNT 495 a 215 c 269 g 293 t 2 other
ORIGIN
1 cctcaaatca ctctttggca acgaccagtt gttacagtaa aaataggagg gcagttaaaa
61 gaagctctat tagatacagg agcagatgat acagtattag aagacataaa cttgccagga
121 aaatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acagtatgat
181 cagatactta tagaaatctg tggaaaaaag gctataggta cagtattagt aggacccaca
241 cctgtcaaca taattggaag aaatatgttg actcagattg gttgtacttt aaattttcca
301 attagtccta ttgaaactgt accagtaaca ttaaagccag gaatggatgg cccaaaggtc
361 aaacaatggc cattgacaga agaaaaaata aaagcattaa cagaaatttg tgatgaaatg
421 gaaaaggaag gaaaaatttc aaaaattggg cctgaaaacc catacaatac tccagtattt
481 gctataaaga aaaaggacag cactaaatgg agaaaattag tagatttcag agaactcaat
541 aaaagaactc aggacttctg ggaagttcaa ttaggaatac cgcatccagc gggtttaaaa
601 aagaaaaaat cagtaacagt actagatgtg ggggatgcat atttttcagt tcctttagat
661 aaagacttta gaaagtacac tgcattcacc atacctagta taaacaatga gacaccagga
721 atcaggtacc aatacaatgt gctcccacag ggatggaaag gatcaccagc aatattccag
781 agtagcatga caaaaatctt agagcccttt agattaaaga atccagacat agttatctat
841 caatacatgg atgacttgta tgtgggatct gatttagaaa taggacagca tagagcaaag
901 gtagaggacc tgagagctca tctgttrara tggggacttt acaccccaga caaaaagcat
961 caaaaagaac ctccatttct ttggatggga tatgaactcc atcctgacaa gtggacagtc
1021 cagcctatac agctgccaga caaagacagc tggactgtca atgatataca gaaattagtg
1081 ggaaaactaa attgggcaag tcaaatttat ccagggatca aagtaaagca actgtgtaaa
1141 ctcctcaggg gagccaaagc actaacagat atagtaccac tgactgaaga agcagaatta
1201 gaattggcag agaacaggga gattctaaaa gaacctgtgc atggggcata ttatgaccca
1261 tcaaaagact tagt
//
last modified: Tue May 31 10:56 2022