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LOCUS	    AY901245		     642 bp    RNA     linear	VRL 10-MAY-2005
DEFINITION  HIV-1 isolate 608 protease (pol) gene, partial cds
ACCESSION   AY901245
VERSION     AY901245.1 GI:63096392
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 642)
            Show all sequences for reference 1
  AUTHORS   Kantor,R., Katzenstein,D.A., Efron,B., Carvalho,A.P., Wynhoven,B.,
	    Cane,P., Clarke,J., Sirivichayakul,S., Soares,M.A., Snoeck,J.,
	    Pillay,C., Rudich,H., Rodrigues,R., Holguin,A., Ariyoshi,K.,
	    Bouzas,M.B., Cahn,P., Sugiura,W., Soriano,V., Brigido,L.F.,
	    Grossman,Z., Morris,L., Vandamme,A.M., Tanuri,A., Phanuphak,P.,
	    Weber,J.N., Pillay,D., Harrigan,P.R., Camacho,R., Schapiro,J.M. and
	    Shafer,R.W.
  TITLE     Impact of HIV-1 Subtype and Antiretroviral Therapy on Protease and
	    Reverse Transcriptase Genotype: Results of a Global Collaboration
  JOURNAL   PLoS Med 2 (4), E112 (2005)
  PUBMED    15839752
REFERENCE   2 (bases 1 to 642)
            Show all sequences for reference 2
  AUTHORS   Kantor,R., Katzenstein,D.A., Eforn,B., Carvalho,A.P., Wynhoven,B.,
	    Cane,P., Clarke,J., Sirivichayakul,S., Soares,M.A., Snoeck,J.,
	    Pillay,C., Rudich,H., Rodrigues,R., Holguin,A., Ariyoshi,K.,
	    Weidle,P., Bouzas,M.B., Cahn,P., Sugiura,W., Soriano,V.,
	    Brigido,L.F., Grossman,Z., Morris,L., Vandamme,A.M., Tanuri,A.,
	    Phanuphak,P., Weber,J., Pillay,D., Harrigan,P.R., Camacho,R.,
	    Schapiro,J.M. and Shafer,R.W.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-JAN-2005) Infectious Diseases, Stanford University,
	    300 Pasteur Drive, room 169, Stanford, CA 94305, USA
REFERENCE   3
            Show all sequences for reference 3
  AUTHORS   Lee,E.J., Kantor,R., Zijenah,L., Sheldon,W., Emel,L., Mateta,P.,
	    Johnston,E., Wells,J., Shetty,A.K., Coovadia,H., Maldonado,Y.,
	    Jones,S.A., Mofenson,L.M., Contag,C.H., Bassett,M. and
	    Katzenstein,D.A.
  CONSRTM   HIVNET 023 Study Team
  TITLE     Breast-Milk Shedding of Drug-Resistant HIV-1 Subtype C in Women
	    Exposed to Single-Dose Nevirapine
  JOURNAL   J. Infect. Dis. 192 (7), 1260-1264 (2005)
  PUBMED    16136470
REFERENCE   4
            Show all sequences for reference 4
  AUTHORS   Kassaye,S., Lee,E., Kantor,R., Johnston,E., Winters,M., Zijenah,L.,
	    Mateta,P. and Katzenstein,D.
  TITLE     Drug Resistance in Plasma and Breast Milk after Single-Dose
	    Nevirapine in Subtype C HIV Type 1: Population and Clonal Sequence
	    Analysis
  JOURNAL   AIDS Res. Hum. Retroviruses 23 (8), 1055-1061 (2007)
  PUBMED    17725424
COMMENT     Sample 8 weeks post-treatment.
FEATURES             Location/Qualifiers
     source	     1..642
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="608"
		     /db_xref="taxon:11676"
     gene	     <1..>642
		     /gene="pol"
     CDS	     <1..>642
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="protease"
		     /protein_id="AAY31596.1"
		     /db_xref="GI:63096393"
		     /translation="ICEEMEKKGKXSKIGPENPYNTPVFPIKKKDSTKWRKLVDFREL
		     NKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFXVPLDESXRKYTXFTIPSINNE
		     APGVRYQYNVLPQGWKGSPSIFQSSMTRILEPFRTQNPEIVIYQYMDDLYVGSDLEIG
		     QHRAKIEELREHLLTWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIKLPEKE"
BASE COUNT	248 a	 101 c	  135 g    151 t      7 other
ORIGIN
       1 atttgtgaag aaatggaaaa gaaaggaaaa wtttcaaaga ttgggcctga gaatccatat 
      61 aacactccag tatttcccat aaaaaagaag gacagtacta agtggagaaa attagtagat 
     121 ttycgggaac tcaataaaag aactcaagat ttttgggaag ttcaattagg aataccacac 
     181 ccagcagggt taaaaaagaa aaaatcagtg acagtactag atgtggggga tgcatatttt 
     241 tmagttcctt tagatgaaag twtcaggaaa tatactgnat tcactatacc tagtataaac 
     301 aatgaagcac caggggttag atatcaatat aatgtgcttc cacagggatg gaaaggatca 
     361 ccatcaatat tccagagtag catgacaaga atyttagagc cctttaggac acagaatcca 
     421 gaaatagtca tctatcaata tatggatgac ttgtatgtag gatctgattt agaaataggg 
     481 caacatagag caaaaataga ggagttaaga gaacatctat taacatgggg atttaccacr 
     541 ccagacaaga aacatcagaa agaacccccg tttctttgga tggggtatga actccatcct 
     601 gacaaatgga cagtacagcc tataaagctg ccagaaaagg ag
//
last modified: Tue May 31 10:56 2022


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