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LOCUS AY901245 642 bp RNA linear VRL 10-MAY-2005
DEFINITION HIV-1 isolate 608 protease (pol) gene, partial cds
ACCESSION AY901245
VERSION AY901245.1 GI:63096392
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 642)
Show all sequences for reference 1
AUTHORS Kantor,R., Katzenstein,D.A., Efron,B., Carvalho,A.P., Wynhoven,B.,
Cane,P., Clarke,J., Sirivichayakul,S., Soares,M.A., Snoeck,J.,
Pillay,C., Rudich,H., Rodrigues,R., Holguin,A., Ariyoshi,K.,
Bouzas,M.B., Cahn,P., Sugiura,W., Soriano,V., Brigido,L.F.,
Grossman,Z., Morris,L., Vandamme,A.M., Tanuri,A., Phanuphak,P.,
Weber,J.N., Pillay,D., Harrigan,P.R., Camacho,R., Schapiro,J.M. and
Shafer,R.W.
TITLE Impact of HIV-1 Subtype and Antiretroviral Therapy on Protease and
Reverse Transcriptase Genotype: Results of a Global Collaboration
JOURNAL PLoS Med 2 (4), E112 (2005)
PUBMED 15839752
REFERENCE 2 (bases 1 to 642)
Show all sequences for reference 2
AUTHORS Kantor,R., Katzenstein,D.A., Eforn,B., Carvalho,A.P., Wynhoven,B.,
Cane,P., Clarke,J., Sirivichayakul,S., Soares,M.A., Snoeck,J.,
Pillay,C., Rudich,H., Rodrigues,R., Holguin,A., Ariyoshi,K.,
Weidle,P., Bouzas,M.B., Cahn,P., Sugiura,W., Soriano,V.,
Brigido,L.F., Grossman,Z., Morris,L., Vandamme,A.M., Tanuri,A.,
Phanuphak,P., Weber,J., Pillay,D., Harrigan,P.R., Camacho,R.,
Schapiro,J.M. and Shafer,R.W.
TITLE Direct Submission
JOURNAL Submitted (21-JAN-2005) Infectious Diseases, Stanford University,
300 Pasteur Drive, room 169, Stanford, CA 94305, USA
REFERENCE 3
Show all sequences for reference 3
AUTHORS Lee,E.J., Kantor,R., Zijenah,L., Sheldon,W., Emel,L., Mateta,P.,
Johnston,E., Wells,J., Shetty,A.K., Coovadia,H., Maldonado,Y.,
Jones,S.A., Mofenson,L.M., Contag,C.H., Bassett,M. and
Katzenstein,D.A.
CONSRTM HIVNET 023 Study Team
TITLE Breast-Milk Shedding of Drug-Resistant HIV-1 Subtype C in Women
Exposed to Single-Dose Nevirapine
JOURNAL J. Infect. Dis. 192 (7), 1260-1264 (2005)
PUBMED 16136470
REFERENCE 4
Show all sequences for reference 4
AUTHORS Kassaye,S., Lee,E., Kantor,R., Johnston,E., Winters,M., Zijenah,L.,
Mateta,P. and Katzenstein,D.
TITLE Drug Resistance in Plasma and Breast Milk after Single-Dose
Nevirapine in Subtype C HIV Type 1: Population and Clonal Sequence
Analysis
JOURNAL AIDS Res. Hum. Retroviruses 23 (8), 1055-1061 (2007)
PUBMED 17725424
COMMENT Sample 8 weeks post-treatment.
FEATURES Location/Qualifiers
source 1..642
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="608"
/db_xref="taxon:11676"
gene <1..>642
/gene="pol"
CDS <1..>642
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="protease"
/protein_id="AAY31596.1"
/db_xref="GI:63096393"
/translation="ICEEMEKKGKXSKIGPENPYNTPVFPIKKKDSTKWRKLVDFREL
NKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFXVPLDESXRKYTXFTIPSINNE
APGVRYQYNVLPQGWKGSPSIFQSSMTRILEPFRTQNPEIVIYQYMDDLYVGSDLEIG
QHRAKIEELREHLLTWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIKLPEKE"
BASE COUNT 248 a 101 c 135 g 151 t 7 other
ORIGIN
1 atttgtgaag aaatggaaaa gaaaggaaaa wtttcaaaga ttgggcctga gaatccatat
61 aacactccag tatttcccat aaaaaagaag gacagtacta agtggagaaa attagtagat
121 ttycgggaac tcaataaaag aactcaagat ttttgggaag ttcaattagg aataccacac
181 ccagcagggt taaaaaagaa aaaatcagtg acagtactag atgtggggga tgcatatttt
241 tmagttcctt tagatgaaag twtcaggaaa tatactgnat tcactatacc tagtataaac
301 aatgaagcac caggggttag atatcaatat aatgtgcttc cacagggatg gaaaggatca
361 ccatcaatat tccagagtag catgacaaga atyttagagc cctttaggac acagaatcca
421 gaaatagtca tctatcaata tatggatgac ttgtatgtag gatctgattt agaaataggg
481 caacatagag caaaaataga ggagttaaga gaacatctat taacatgggg atttaccacr
541 ccagacaaga aacatcagaa agaacccccg tttctttgga tggggtatga actccatcct
601 gacaaatgga cagtacagcc tataaagctg ccagaaaagg ag
//
last modified: Tue May 31 10:56 2022