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LOCUS	    AY838611		    1476 bp    RNA     linear	VRL 25-JUL-2008
DEFINITION  HIV-1 isolate 2514M from South Africa gag protein (gag) gene,
	    partial cds
ACCESSION   AY838611
VERSION     AY838611.1 GI:56608749
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1476)
            Show all sequences for reference 1
  AUTHORS   Kiepiela,P., Leslie,A.J., Honeyborne,I., Ramduth,D., Thobakgale,C.,
	    Chetty,S., Rathnavalu,P., Moore,C., Pfafferott,K., Hilton,L.,
	    Zimbwa,P., Moore,S., Allen,T., Brander,C., Addo,M.M., Atfeld,M.,
	    James,I., Mallal,S., Bunce,M., Barber,L.D., Szinger,J., Day,C.,
	    Klenerman,P., Mullins,J., Korber,B., Coovadia,H.M., Walker,B.D. and
	    Goulder,P.J.R.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2004) Theoretical Biology and Biophysics, Los
	    Alamos National Laboratory, MS K710, Los Alamos, NM 87544, USA
REFERENCE   2
            Show all sequences for reference 2
  AUTHORS   Kiepiela,P., Leslie,A.J., Honeyborne,I., Ramduth,D., Thobakgale,C.,
	    Chetty,S., Rathnavalu,P., Moore,C., Pfafferott,K.J., Hilton,L.,
	    Zimbwa,P., Moore,S., Allen,T., Brander,C., Addo,M.M., Altfeld,M.,
	    James,I., Mallal,S., Bunce,M., Barber,L.D., Szinger,J., Day,C.,
	    Klenerman,P., Mullins,J., Korber,B., Coovadia,H.M., Walker,B.D. and
	    Goulder,P.J.
  TITLE     Dominant influence of HLA-B in mediating the potential co-evolution
	    of HIV and HLA
  JOURNAL   Nature 432 (7018), 769-775 (2004)
  PUBMED    15592417
FEATURES             Location/Qualifiers
     source	     1..1476
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="2514M"
		     /isolation_source="blood from heterosexual female patient
		     who attended prenatal clinic"
		     /db_xref="taxon:11676"
		     /country="South Africa: Durban"
		     /note="subtype: C"
     gene	     1..>1476
		     /gene="gag"
     CDS	     1..>1476
		     /gene="gag"
		     /codon_start="1"
		     /transl_table="1"
		     /product="gag protein"
		     /protein_id="AAW03008.2"
		     /db_xref="GI:194466279"
		     /translation="MGARASILRGEKLDKWEKIRLRPGGKKHYMLKHJVWASRELERF
		     ALNPGLLETSEGCRKIXXQLQPALQTGTXELKSLYNTVATLYCVHEKIEVRDTKEALD
		     KIEEEQNKSQQKTQQATAADGEVSQNYPIVQNLQGQMVHQSLSPRTLNAWVKVIEEKA
		     FSPEVIPMFTALSEGATPQDLNTMLNTVGGHQAAMQMLKDTINDEAAEWDRLHPVHAG
		     PIAPGQMREPRGSDIAGTTSTLQEQIAWMTSNPPIPVGDIYKRWIILGLNKIVRMYSP
		     VSILDIRQGPKEPFRDYVDRFFKTLRAEQATQDVKNWMTDTLLVQNANPDCKTILKAL
		     GSGATLEEMMTACQGVGGPGHKARVLAEAMSQANNINVMMQRSNFKGPKRIVKCFNCG
		     KEGHIARNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGRLWPSHKGRPGNFLQARPE
		     PTAPPAESFRFEETTPILKQEPKDREPLTSLKSLFGSDPLSQ"
BASE COUNT	540 a	 285 c	  357 g    290 t      4 other
ORIGIN
       1 atgggtgcga gagcgtcaat attaagaggc gaaaaattag ataaatggga aaaaattagg 
      61 ttaaggccag ggggaaagaa acattatatg ttaaaacacm tagtatgggc aagcagggag 
     121 ctggaaagat ttgcacttaa ccctggcctt ttagaaacat cagaaggctg tagaaaaata 
     181 atramgcagc tacaaccagc tcttcagaca ggaacaragg aacttaaatc attatacaac 
     241 acagtagcaa ctctctattg tgtacatgaa aagatagagg tacgagacac caaggaagcc 
     301 ttagacaaga tagaggaaga acaaaacaaa agtcagcaaa aaacacagca ggcaacagcg 
     361 gctgacggag aggtcagtca aaattatcct atagtgcaga atctccaagg gcaaatggta 
     421 catcaaagcc tatcacctag aaccttgaat gcatgggtaa aagtaataga ggaaaaggct 
     481 tttagcccag aggtaatacc catgtttaca gcattatcag aaggagccac cccacaagat 
     541 ttaaacacca tgttaaatac ggtgggggga catcaagcag ccatgcaaat gttaaaagat 
     601 accatcaatg acgaggctgc agaatgggat agattacacc cagtacatgc agggcctatt 
     661 gcaccaggcc aaatgagaga gccaagggga agtgacatag caggaaccac tagtaccctt 
     721 caggaacaaa tagcatggat gacaagtaat ccacctattc cagtgggaga catctataaa 
     781 agatggataa ttctggggtt aaataaaata gtgagaatgt atagccctgt cagcatcttg 
     841 gacataagac aagggccaaa ggaacccttt agagactatg tagaccggtt ctttaaaact 
     901 ttaagagctg aacaagctac acaagatgta aaaaattgga tgacagacac cttgttggtc 
     961 caaaatgcga acccagattg taagaccatt ttaaaagcat taggatcagg ggctacatta 
    1021 gaagaaatga tgacagcatg tcagggagtg ggagggcctg gccacaaagc aagagtgttg 
    1081 gctgaggcaa tgagccaagc aaacaatata aatgtaatga tgcaaagaag caattttaaa 
    1141 ggccctaaaa gaattgttaa atgtttcaac tgtggcaagg aagggcacat agccagaaat 
    1201 tgcagagccc ctaggaaaaa gggctgttgg aaatgtggaa aggaaggaca tcaaatgaaa 
    1261 gactgtactg agagacaggc taatttttta gggagacttt ggccttccca caagggaagg 
    1321 ccagggaatt tccttcaggc caggccagag ccaacggctc caccagcaga gagcttcagg 
    1381 ttcgaggaga caacccccat tctgaagcag gagccgaaag acagggaacc cttaacttcc 
    1441 ctcaaatcac tctttggcag cgaccccttg tctcaa
//
last modified: Tue May 31 10:56 2022


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