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LOCUS AY838611 1476 bp RNA linear VRL 25-JUL-2008
DEFINITION HIV-1 isolate 2514M from South Africa gag protein (gag) gene,
partial cds
ACCESSION AY838611
VERSION AY838611.1 GI:56608749
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1476)
Show all sequences for reference 1
AUTHORS Kiepiela,P., Leslie,A.J., Honeyborne,I., Ramduth,D., Thobakgale,C.,
Chetty,S., Rathnavalu,P., Moore,C., Pfafferott,K., Hilton,L.,
Zimbwa,P., Moore,S., Allen,T., Brander,C., Addo,M.M., Atfeld,M.,
James,I., Mallal,S., Bunce,M., Barber,L.D., Szinger,J., Day,C.,
Klenerman,P., Mullins,J., Korber,B., Coovadia,H.M., Walker,B.D. and
Goulder,P.J.R.
TITLE Direct Submission
JOURNAL Submitted (26-NOV-2004) Theoretical Biology and Biophysics, Los
Alamos National Laboratory, MS K710, Los Alamos, NM 87544, USA
REFERENCE 2
Show all sequences for reference 2
AUTHORS Kiepiela,P., Leslie,A.J., Honeyborne,I., Ramduth,D., Thobakgale,C.,
Chetty,S., Rathnavalu,P., Moore,C., Pfafferott,K.J., Hilton,L.,
Zimbwa,P., Moore,S., Allen,T., Brander,C., Addo,M.M., Altfeld,M.,
James,I., Mallal,S., Bunce,M., Barber,L.D., Szinger,J., Day,C.,
Klenerman,P., Mullins,J., Korber,B., Coovadia,H.M., Walker,B.D. and
Goulder,P.J.
TITLE Dominant influence of HLA-B in mediating the potential co-evolution
of HIV and HLA
JOURNAL Nature 432 (7018), 769-775 (2004)
PUBMED 15592417
FEATURES Location/Qualifiers
source 1..1476
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="2514M"
/isolation_source="blood from heterosexual female patient
who attended prenatal clinic"
/db_xref="taxon:11676"
/country="South Africa: Durban"
/note="subtype: C"
gene 1..>1476
/gene="gag"
CDS 1..>1476
/gene="gag"
/codon_start="1"
/transl_table="1"
/product="gag protein"
/protein_id="AAW03008.2"
/db_xref="GI:194466279"
/translation="MGARASILRGEKLDKWEKIRLRPGGKKHYMLKHJVWASRELERF
ALNPGLLETSEGCRKIXXQLQPALQTGTXELKSLYNTVATLYCVHEKIEVRDTKEALD
KIEEEQNKSQQKTQQATAADGEVSQNYPIVQNLQGQMVHQSLSPRTLNAWVKVIEEKA
FSPEVIPMFTALSEGATPQDLNTMLNTVGGHQAAMQMLKDTINDEAAEWDRLHPVHAG
PIAPGQMREPRGSDIAGTTSTLQEQIAWMTSNPPIPVGDIYKRWIILGLNKIVRMYSP
VSILDIRQGPKEPFRDYVDRFFKTLRAEQATQDVKNWMTDTLLVQNANPDCKTILKAL
GSGATLEEMMTACQGVGGPGHKARVLAEAMSQANNINVMMQRSNFKGPKRIVKCFNCG
KEGHIARNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGRLWPSHKGRPGNFLQARPE
PTAPPAESFRFEETTPILKQEPKDREPLTSLKSLFGSDPLSQ"
BASE COUNT 540 a 285 c 357 g 290 t 4 other
ORIGIN
1 atgggtgcga gagcgtcaat attaagaggc gaaaaattag ataaatggga aaaaattagg
61 ttaaggccag ggggaaagaa acattatatg ttaaaacacm tagtatgggc aagcagggag
121 ctggaaagat ttgcacttaa ccctggcctt ttagaaacat cagaaggctg tagaaaaata
181 atramgcagc tacaaccagc tcttcagaca ggaacaragg aacttaaatc attatacaac
241 acagtagcaa ctctctattg tgtacatgaa aagatagagg tacgagacac caaggaagcc
301 ttagacaaga tagaggaaga acaaaacaaa agtcagcaaa aaacacagca ggcaacagcg
361 gctgacggag aggtcagtca aaattatcct atagtgcaga atctccaagg gcaaatggta
421 catcaaagcc tatcacctag aaccttgaat gcatgggtaa aagtaataga ggaaaaggct
481 tttagcccag aggtaatacc catgtttaca gcattatcag aaggagccac cccacaagat
541 ttaaacacca tgttaaatac ggtgggggga catcaagcag ccatgcaaat gttaaaagat
601 accatcaatg acgaggctgc agaatgggat agattacacc cagtacatgc agggcctatt
661 gcaccaggcc aaatgagaga gccaagggga agtgacatag caggaaccac tagtaccctt
721 caggaacaaa tagcatggat gacaagtaat ccacctattc cagtgggaga catctataaa
781 agatggataa ttctggggtt aaataaaata gtgagaatgt atagccctgt cagcatcttg
841 gacataagac aagggccaaa ggaacccttt agagactatg tagaccggtt ctttaaaact
901 ttaagagctg aacaagctac acaagatgta aaaaattgga tgacagacac cttgttggtc
961 caaaatgcga acccagattg taagaccatt ttaaaagcat taggatcagg ggctacatta
1021 gaagaaatga tgacagcatg tcagggagtg ggagggcctg gccacaaagc aagagtgttg
1081 gctgaggcaa tgagccaagc aaacaatata aatgtaatga tgcaaagaag caattttaaa
1141 ggccctaaaa gaattgttaa atgtttcaac tgtggcaagg aagggcacat agccagaaat
1201 tgcagagccc ctaggaaaaa gggctgttgg aaatgtggaa aggaaggaca tcaaatgaaa
1261 gactgtactg agagacaggc taatttttta gggagacttt ggccttccca caagggaagg
1321 ccagggaatt tccttcaggc caggccagag ccaacggctc caccagcaga gagcttcagg
1381 ttcgaggaga caacccccat tctgaagcag gagccgaaag acagggaacc cttaacttcc
1441 ctcaaatcac tctttggcag cgaccccttg tctcaa
//
last modified: Tue May 31 10:56 2022