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LOCUS	    AY824067		     360 bp    RNA     linear	VRL 03-MAY-2006
DEFINITION  HIV-1 isolate P23.5.9_734 from USA envelope glycoprotein (env)
	    gene, partial cds
ACCESSION   AY824067
VERSION     AY824067.1 GI:56124495
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 360)
            Show all sequences for reference 1
  AUTHORS   Edwards,C.T.T., Holmes,E.C., Wilson,D.J., Viscidi,R.P.,
	    Abrams,E.J., Phillips,R.E. and Drummond,A.J.
  TITLE     Population genetic estimation of the loss of genetic diversity
	    during horizontal transmission of HIV-1
  JOURNAL   BMC Evol. Biol. 6, 28 (2006)
  PUBMED    16556318
REFERENCE   2 (bases 1 to 360)
            Show all sequences for reference 2
  AUTHORS   Edwards,C.T., Viscidi,R.P. and Abrams,E.J.
  TITLE     Deterministic evolution of HIV-1 envelope is dominated by short
	    lived deleterious mutations
  JOURNAL   Unpublished
REFERENCE   3 (bases 1 to 360)
            Show all sequences for reference 3
  AUTHORS   Edwards,C.T., Viscidi,R.P. and Abrams,E.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-NOV-2004) Clinical Medicine, University of Oxford,
	    The Peter Medawar Building, Oxford OX1 3SY, UK
FEATURES             Location/Qualifiers
     source	     1..360
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="P23.5.9_734"
		     /db_xref="taxon:11676"
		     /country="USA: New York"
		     /note="cloned RNA sampled longitudinally from birth name
		     suffix represents days since first sample"
     gene	     <1..>360
		     /gene="env"
     CDS	     <1..>360
		     /gene="env"
		     /note="V3 region"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="AAV74694.1"
		     /db_xref="GI:56124496"
		     /translation="CTHGIKPVVSTQLLLNGSLAEEDVVIRSENFTNNAKTIIVHLNE
		     PVTINCTRPNNNTRKSINIGPGRTFYTTGAIIGDIRLAHCNLSRTQWNKALNRTAIKL
		     REQFKNKTIVFSQSSGGD"
BASE COUNT	159 a	  57 c	   61 g     83 t
ORIGIN
       1 tgtacacatg gaattaagcc agtagtatca actcaactgc tgttaaatgg cagtctagca 
      61 gaagaagatg tagtaattag atctgaaaac ttcacgaaca atgctaaaac cataatagta 
     121 catttgaatg aacctgtaac aattaattgt acaagaccca acaacaatac aagaaaaagt 
     181 ataaatatag gaccaggcag aacattttat acaacaggag caataatagg agatataaga 
     241 ctagcacatt gtaaccttag tagaacacaa tggaataaag ctttaaacag gacagctata 
     301 aaattaagag aacaatttaa aaataaaaca atagtcttta gtcaatcctc aggaggggac 
//
last modified: Tue May 31 10:56 2022


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