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LOCUS AY824060 360 bp RNA linear VRL 03-MAY-2006
DEFINITION HIV-1 isolate P23.5.1_734 from USA envelope glycoprotein (env)
gene, partial cds
ACCESSION AY824060
VERSION AY824060.1 GI:56124481
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 360)
Show all sequences for reference 1
AUTHORS Edwards,C.T.T., Holmes,E.C., Wilson,D.J., Viscidi,R.P.,
Abrams,E.J., Phillips,R.E. and Drummond,A.J.
TITLE Population genetic estimation of the loss of genetic diversity
during horizontal transmission of HIV-1
JOURNAL BMC Evol. Biol. 6, 28 (2006)
PUBMED 16556318
REFERENCE 2 (bases 1 to 360)
Show all sequences for reference 2
AUTHORS Edwards,C.T., Viscidi,R.P. and Abrams,E.J.
TITLE Deterministic evolution of HIV-1 envelope is dominated by short
lived deleterious mutations
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 360)
Show all sequences for reference 3
AUTHORS Edwards,C.T., Viscidi,R.P. and Abrams,E.J.
TITLE Direct Submission
JOURNAL Submitted (12-NOV-2004) Clinical Medicine, University of Oxford,
The Peter Medawar Building, Oxford OX1 3SY, UK
FEATURES Location/Qualifiers
source 1..360
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="P23.5.1_734"
/db_xref="taxon:11676"
/country="USA: New York"
/note="cloned RNA sampled longitudinally from birth name
suffix represents days since first sample"
gene <1..>360
/gene="env"
CDS <1..>360
/gene="env"
/note="V3 region"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="AAV74687.1"
/db_xref="GI:56124482"
/translation="CTHGIKPVVSTQLLLNGSLAEEDVVIRSENFTNNAKTIIVHLNE
PVTINCTRPNNNTRKSINIGPGRAFYTTGAIIGDIRLAHCNLSRTQWNKALNRTAIKL
REQFKNKTIVFNQSSGGD"
BASE COUNT 159 a 58 c 61 g 82 t
ORIGIN
1 tgtacacatg gaattaagcc agtagtatca actcaactgc tgttaaatgg cagtctagca
61 gaagaagatg tagtaattag atctgaaaac ttcacgaaca atgctaaaac cataatagta
121 catctgaatg aacctgtaac aattaattgt acaagaccca acaacaatac aagaaaaagt
181 ataaatatag gaccaggcag agcattttat acaacaggag caataatagg agatataaga
241 ctagcacatt gtaaccttag tagaacacaa tggaataaag ctttaaacag gacagctata
301 aaattaagag aacaatttaa aaataaaaca atagtcttta atcaatcctc aggaggggac
//
last modified: Tue May 31 10:56 2022