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LOCUS	    AY756877		    1302 bp    RNA     linear	VRL 13-JUN-2005
DEFINITION  HIV-1 isolate 9022 from Malawi pol protein (pol) gene, partial cds
ACCESSION   AY756877
VERSION     AY756877.1 GI:59064960
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1302)
            Show all sequences for reference 1
  AUTHORS   Eshleman,S.H., Hoover,D.R., Chen,S., Hudelson,S.E., Guay,L.A.,
	    Mwatha,A., Fiscus,S.A., Mmiro,F., Musoke,P., Jackson,J.B.,
	    Kumwenda,N. and Taha,T.
  TITLE     Nevirapine (NVP) Resistance in Women with HIV-1 Subtype C, Compared
	    with Subtypes A and D, after the Administration of Single-Dose NVP
  JOURNAL   J. Infect. Dis. 192 (1), 30-36 (2005)
  PUBMED    15942891
REFERENCE   2 (bases 1 to 1302)
            Show all sequences for reference 2
  AUTHORS   Eshleman,S.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-SEP-2004) Pathology, The Johns Hopkins Medical
	    Institutions, 720 Rutland Avenue Ross Building 646, Baltimore, MD
	    21205, USA
COMMENT     These sequences are from the NVAZ, a mother/infant study conducted
	    in Malawi in 2000-2002 (info from Taha et al. 2003 PMID#14568737).
	    Thus the sample collection date is annotated as 2000-2002.
FEATURES             Location/Qualifiers
     source	     1..1302
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="9022"
		     /db_xref="taxon:11676"
		     /country="Malawi"
		     /note="subtype: C"
     gene	     <1..>1302
		     /gene="pol"
     CDS	     <1..>1302
		     /gene="pol"
		     /note="encodes protease and reverse transcriptase"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AAW84143.1"
		     /db_xref="GI:59064961"
		     /translation="PQITLWQRPLVSIKVGGQIREALLDTGADDTVLEEINLPGKWKP
		     KMIGGIGGFIKVRQYDQVLIEICGKKAVGTVLVGPTPVNIIGRNMLTQLGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTAICDEMEKEGKISKIGPENPYNTPVF
		     AIRKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKXKSVTVLDVGDAYFSVP
		     LDADFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRAKNPE
		     IVIYQYMDDLYVGSDLEIGQHRAKIEELREHLLKWGFTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQPIQLPEKNSWTVNDIQKLVGKLNWASQIYPGIKVKQLCXLLRGTKALTZIV
		     PLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGHD"
BASE COUNT	509 a	 210 c	  281 g    297 t      5 other
ORIGIN
       1 cctcaaatca ctctttggca gcgacccctt gtctcaataa aagtaggggg ccaaataagg 
      61 gaggctctct tagacacagg agcagatgat acagtattag aagaaataaa tttgccagga 
     121 aaatggaaac caaaaatgat aggaggaatt ggaggtttta tcaaagtaag acagtatgat 
     181 caagtactta tagaaatttg tggaaaaaag gctgtaggta cagtgttagt agggcctaca 
     241 cctgtcaaca taattggaag aaatatgtta actcaacttg gatgtacact aaatttccca 
     301 attagtccca ttgaaactgt accagtaaaa ttaaagccag gaatggatgg tccaaaggtc 
     361 aaacaatggc cattgacaga agagaaaata aaagcattaa cagcaatttg tgatgaaatg 
     421 gagaaggaag gaaaaatttc aaaaattggg cctgaaaatc catataacac tccagtattt 
     481 gccataagaa agaaggacag tactaagtgg agaaaattag tagatttcag ggaactcaat 
     541 aaaagaactc aagacttttg ggaggttcaa ttaggaatac cacacccagc agggttaaaa 
     601 aagaamaaat cagtgacagt actggatgtg ggggatgcat atttttcagt tcctttagat 
     661 gcagacttca ggaaatatac tgcattcacc atacctagta taaacaatga aacaccaggg 
     721 attagatatc aatataatgt gytgccacag ggatggaaag gatcaccagc aatattccag 
     781 agtagcatga caaaaatctt agagcccttt agagcaaaaa atccagaaat agtcatctat 
     841 caatatatgg atgacttgta tgtaggatct gacttagaaa tagggcaaca tagagcaaaa 
     901 atagaggagt taagagaaca tttattgaag tggggattta ccacaccaga caagaaacat 
     961 cagaaagaac cyccatttct ttggatgggg tatgaactcc atcctgacaa atggacagta 
    1021 cagcctatac agctgccaga aaagaatagc tggactgtca atgatataca gaagttagtg 
    1081 ggaaaattaa actgggcaag tcagatttac ccagggatta aggtaaagca actttgtara 
    1141 ctccttaggg ggaccaaagc actaacasaa atagtaccac taaccgaaga agcagaatta 
    1201 gaattggcag agaacaggga aattctaaaa gaaccagtac atggagtata ttatgaccca 
    1261 tcaaaagatt tgatagctga aatacagaaa cagggtcatg at
//
last modified: Tue May 31 10:56 2022


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