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LOCUS AY756877 1302 bp RNA linear VRL 13-JUN-2005
DEFINITION HIV-1 isolate 9022 from Malawi pol protein (pol) gene, partial cds
ACCESSION AY756877
VERSION AY756877.1 GI:59064960
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1302)
Show all sequences for reference 1
AUTHORS Eshleman,S.H., Hoover,D.R., Chen,S., Hudelson,S.E., Guay,L.A.,
Mwatha,A., Fiscus,S.A., Mmiro,F., Musoke,P., Jackson,J.B.,
Kumwenda,N. and Taha,T.
TITLE Nevirapine (NVP) Resistance in Women with HIV-1 Subtype C, Compared
with Subtypes A and D, after the Administration of Single-Dose NVP
JOURNAL J. Infect. Dis. 192 (1), 30-36 (2005)
PUBMED 15942891
REFERENCE 2 (bases 1 to 1302)
Show all sequences for reference 2
AUTHORS Eshleman,S.H.
TITLE Direct Submission
JOURNAL Submitted (22-SEP-2004) Pathology, The Johns Hopkins Medical
Institutions, 720 Rutland Avenue Ross Building 646, Baltimore, MD
21205, USA
COMMENT These sequences are from the NVAZ, a mother/infant study conducted
in Malawi in 2000-2002 (info from Taha et al. 2003 PMID#14568737).
Thus the sample collection date is annotated as 2000-2002.
FEATURES Location/Qualifiers
source 1..1302
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="9022"
/db_xref="taxon:11676"
/country="Malawi"
/note="subtype: C"
gene <1..>1302
/gene="pol"
CDS <1..>1302
/gene="pol"
/note="encodes protease and reverse transcriptase"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AAW84143.1"
/db_xref="GI:59064961"
/translation="PQITLWQRPLVSIKVGGQIREALLDTGADDTVLEEINLPGKWKP
KMIGGIGGFIKVRQYDQVLIEICGKKAVGTVLVGPTPVNIIGRNMLTQLGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTAICDEMEKEGKISKIGPENPYNTPVF
AIRKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKXKSVTVLDVGDAYFSVP
LDADFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRAKNPE
IVIYQYMDDLYVGSDLEIGQHRAKIEELREHLLKWGFTTPDKKHQKEPPFLWMGYELH
PDKWTVQPIQLPEKNSWTVNDIQKLVGKLNWASQIYPGIKVKQLCXLLRGTKALTZIV
PLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGHD"
BASE COUNT 509 a 210 c 281 g 297 t 5 other
ORIGIN
1 cctcaaatca ctctttggca gcgacccctt gtctcaataa aagtaggggg ccaaataagg
61 gaggctctct tagacacagg agcagatgat acagtattag aagaaataaa tttgccagga
121 aaatggaaac caaaaatgat aggaggaatt ggaggtttta tcaaagtaag acagtatgat
181 caagtactta tagaaatttg tggaaaaaag gctgtaggta cagtgttagt agggcctaca
241 cctgtcaaca taattggaag aaatatgtta actcaacttg gatgtacact aaatttccca
301 attagtccca ttgaaactgt accagtaaaa ttaaagccag gaatggatgg tccaaaggtc
361 aaacaatggc cattgacaga agagaaaata aaagcattaa cagcaatttg tgatgaaatg
421 gagaaggaag gaaaaatttc aaaaattggg cctgaaaatc catataacac tccagtattt
481 gccataagaa agaaggacag tactaagtgg agaaaattag tagatttcag ggaactcaat
541 aaaagaactc aagacttttg ggaggttcaa ttaggaatac cacacccagc agggttaaaa
601 aagaamaaat cagtgacagt actggatgtg ggggatgcat atttttcagt tcctttagat
661 gcagacttca ggaaatatac tgcattcacc atacctagta taaacaatga aacaccaggg
721 attagatatc aatataatgt gytgccacag ggatggaaag gatcaccagc aatattccag
781 agtagcatga caaaaatctt agagcccttt agagcaaaaa atccagaaat agtcatctat
841 caatatatgg atgacttgta tgtaggatct gacttagaaa tagggcaaca tagagcaaaa
901 atagaggagt taagagaaca tttattgaag tggggattta ccacaccaga caagaaacat
961 cagaaagaac cyccatttct ttggatgggg tatgaactcc atcctgacaa atggacagta
1021 cagcctatac agctgccaga aaagaatagc tggactgtca atgatataca gaagttagtg
1081 ggaaaattaa actgggcaag tcagatttac ccagggatta aggtaaagca actttgtara
1141 ctccttaggg ggaccaaagc actaacasaa atagtaccac taaccgaaga agcagaatta
1201 gaattggcag agaacaggga aattctaaaa gaaccagtac atggagtata ttatgaccca
1261 tcaaaagatt tgatagctga aatacagaaa cagggtcatg at
//
last modified: Tue May 31 10:56 2022