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LOCUS	    AY756876		    1302 bp    RNA     linear	VRL 13-JUN-2005
DEFINITION  HIV-1 isolate 9015 from Malawi pol protein (pol) gene, partial cds
ACCESSION   AY756876
VERSION     AY756876.1 GI:59064958
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1302)
            Show all sequences for reference 1
  AUTHORS   Eshleman,S.H., Hoover,D.R., Chen,S., Hudelson,S.E., Guay,L.A.,
	    Mwatha,A., Fiscus,S.A., Mmiro,F., Musoke,P., Jackson,J.B.,
	    Kumwenda,N. and Taha,T.
  TITLE     Nevirapine (NVP) Resistance in Women with HIV-1 Subtype C, Compared
	    with Subtypes A and D, after the Administration of Single-Dose NVP
  JOURNAL   J. Infect. Dis. 192 (1), 30-36 (2005)
  PUBMED    15942891
REFERENCE   2 (bases 1 to 1302)
            Show all sequences for reference 2
  AUTHORS   Eshleman,S.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-SEP-2004) Pathology, The Johns Hopkins Medical
	    Institutions, 720 Rutland Avenue Ross Building 646, Baltimore, MD
	    21205, USA
COMMENT     These sequences are from the NVAZ, a mother/infant study conducted
	    in Malawi in 2000-2002 (info from Taha et al. 2003 PMID#14568737).
	    Thus the sample collection date is annotated as 2000-2002.
FEATURES             Location/Qualifiers
     source	     1..1302
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="9015"
		     /db_xref="taxon:11676"
		     /country="Malawi"
		     /note="subtype: C"
     gene	     <1..>1302
		     /gene="pol"
     CDS	     <1..>1302
		     /gene="pol"
		     /note="encodes protease and reverse transcriptase"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AAW84142.1"
		     /db_xref="GI:59064959"
		     /translation="PQITLWQRPLVTIKVGGQIKEALLDTGADDTVLEEINLPGKWKP
		     KMIGGIGGFIKVRQYDQILIEICGKKAIGXVLVGPTPVNIIGRNMLTQLGCTLNFPIS
		     PVXTXPVKLKPGMDGPKVKQWPLTEEKIKALTAICDEMEKEGKITKIGPENPYNTPVF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKXKSVTVLDVGDAYFSVP
		     LDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPXIFQSSMTKILEPFRAQNPE
		     VVIXQYMDDLYVXSDLEIGQHRAKIEELREHLLKWGFTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQPIQLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGAKALTDIV
		     PLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGHD"
BASE COUNT	506 a	 215 c	  281 g    292 t      8 other
ORIGIN
       1 cctcaaatca ctctttggca gcgacccctt gtcacaataa aagtaggggg ccagataaag 
      61 gaggctctct tagacacagg agcagatgac acagtattag aagaaataaa tttgccagga 
     121 aaatggaaac caaaaatgat aggaggaatt ggaggtttta tcaaagtaag acagtatgat 
     181 caaatactta tagaaatttg tggaaaaaag gctataggtw cagtattggt gggacctaca 
     241 cctgttaaca taattggaag aaatatgttg actcagcttg gatgtacact aaattttcca 
     301 atcagtcccg ttraaactrt accagtaaaa ttaaagccag gaatggatgg cccaaaggtt 
     361 aaacaatggc cattgacaga agagaaaata aaagcattaa cagcaatttg tgacgaaatg 
     421 gagaaggaag gaaaaattac aaaaattggg cctgaaaatc catataacac tccagtattt 
     481 gccataaaaa agaaggacag tactaagtgg agaaaattag tagatttcag ggaactcaat 
     541 aaaagaactc aagatttttg ggaggttcaa ttaggaatac cacacccagc agggttaaaa 
     601 aagaamaaat cagtgacagt actggatgtg ggggatgcat atttttcagt tcctttagat 
     661 gaagacttca ggaaatatac tgcattcacc atacctagta taaacaatga gacaccaggg 
     721 attagatatc aatataatgt gcttccacag ggatggaaag gatcaccakc aatattccag 
     781 agtagcatga caaaaatctt agagcccttt agagcacaaa atccagaagt agtcatctrt 
     841 caatatatgg atgacttgta tgtagsatct gacttagaaa tagggcaaca tagagcaaag 
     901 atagaggagt taagagaaca tctgttaaag tggggattta ccacaccaga caagaaacat 
     961 caaaaggaac ccccatttct ttggatgggg tatgaactcc atcctgacaa atggacagta 
    1021 cagcctatac agctaccaga aaaggacagc tggactgtca atgatataca aaagttagtg 
    1081 ggaaaattaa actgggcaag tcagatttac ccagggatta aagtaaggca actttgtaaa 
    1141 ctccttaggg gggccaaagc actaacagac atagtaccac taactgaaga agcagaatta 
    1201 gaattggcag agaayaggga aattctaaaa gaaccagtgc atggagtata ctatgaccca 
    1261 tcaaaagact tgatagctga aatacagaaa cagggacatg at
//
last modified: Tue May 31 10:56 2022


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