HIV Databases HIV Databases home HIV Databases home
HIV Sequence Database



Download: ENTIRE SEQUENCE SEQUENCE FRAGMENT start end
Format:  
View NCBI entry		Download GenBank file		Graphics View		Download GFF3 File

LOCUS	    AY611309		     450 bp    DNA     linear	VRL 01-JUL-2004
DEFINITION  HIV-1 isolate Ac-33 Day 1413 1b19.fa from USA gag protein (gag)
	    gene, partial cds
ACCESSION   AY611309
VERSION     AY611309.1 GI:48927836
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 450)
            Show all sequences for reference 1
  AUTHORS   Allen,T.M., Altfeld,M., Yu,X.G., O'Sullivan,K.M., Lichterfeld,M.,
	    Le Gall,S., John,M., Mothe,B.R., Lee,P.K., Kalife,E.T., Cohen,D.E.,
	    Freedberg,K.A., Strick,D.A., Johnson,M.N., Sette,A.,
	    Rosenberg,E.S., Mallal,S.A., Goulder,P.J.R., Brander,C. and
	    Walker,B.D.
  TITLE     Selection, Transmission, and Reversion of an Antigen-Processing
	    Cytotoxic T-Lymphocyte Escape Mutation in Human Immunodeficiency
	    Virus Type 1 Infection
  JOURNAL   J. Virol. 78 (13), 7069-7078 (2004)
  PUBMED    15194783
REFERENCE   2 (bases 1 to 450)
            Show all sequences for reference 2
  AUTHORS   Allen,T.M., Altfeld,M., Yu,X.G., O'Sullivan,K.M., Lichterfeld,M.,
	    Le Gall,S., John,M., Mothe,B.R., Lee,P.K., Kalife,E.T., Cohen,D.E.,
	    Freedberg,K.A., Strick,D.A., Johnson,M.N., Sette,A.,
	    Rosenberg,E.S., Mallal,S.A., Goulder,P.J.R., Brander,C. and
	    Walker,B.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-APR-2004) Infectious Disease Division, Partners AIDS
	    Research Center and Massachusetts General Hospital, 149 13th
	    Street, Charlestown, MA 02129, USA
FEATURES             Location/Qualifiers
     source	     1..450
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="Ac-33 Day 1413 1b19.fa"
		     /db_xref="taxon:11676"
		     /country="USA"
     gene	     1..>450
		     /gene="gag"
     CDS	     1..>450
		     /gene="gag"
		     /codon_start="1"
		     /transl_table="1"
		     /product="gag protein"
		     /protein_id="AAT47630.1"
		     /db_xref="GI:48927837"
		     /translation="MGARASVLSGGELDKWEKIRLRPGSKKKYQLKHIVWASRELERF
		     AVNPGLLETSGGCRQILEQLQPSLQTGSEELKSLYNTVATLYCVHQKIDIRDTKEALD
		     KIEEEQSKSKKKAQQAATDTGKSSQVSQNYPIVQNLQGQMVHQPISPR"
BASE COUNT	179 a	  84 c	  107 g     80 t
ORIGIN
       1 atgggtgcga gagcgtcggt attaagcggg ggagaattag ataagtggga aaaaattcgg 
      61 ttaaggccag ggagtaagaa aaaatatcag ttaaaacata tagtatgggc aagcagggag 
     121 ctagaacgat tcgcagtcaa ccctggcctg ttggaaacat caggaggctg tagacaaata 
     181 ttggaacaac tacagccatc cctccagaca ggatcagaag aacttaaatc attatataat 
     241 acagtagcaa ccctctattg tgtgcatcaa aagatagaca taagagacac caaggaagct 
     301 ttagacaaaa tagaggaaga gcaaagcaaa agtaagaaaa aagcacagca agcagcaact 
     361 gacacaggaa aaagcagcca ggtcagtcaa aattacccta tagtgcaaaa ccttcagggg 
     421 caaatggtac atcagcccat atcacctaga 
//
last modified: Tue May 31 10:56 2022


Questions or comments? Contact us at seq-info@lanl.gov.