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LOCUS AY605615 702 bp RNA linear VRL 30-APR-2005
DEFINITION HIV-1 isolate TH212_RT from Thailand pol protein (pol) gene,
partial cds
ACCESSION AY605615
VERSION AY605615.1 GI:51342852
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 702)
Show all sequences for reference 1
AUTHORS Sirivichayakul,S. and Phanuphak,P.
TITLE RT and protease sequences from HIV-1 non-B infected persons from
Thailand
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 702)
Show all sequences for reference 2
AUTHORS Sirivichayakul,S. and Phanuphak,P.
TITLE Direct Submission
JOURNAL Submitted (23-APR-2004) Division of Allergy and Clinical
Immunology, Department of Medicine, Faculty of Medicine,
Chulalongkorn University, Rama IV Road, Bangkok 10330, Thailand
REFERENCE 3
Show all sequences for reference 3
AUTHORS Kantor,R., Katzenstein,D.A., Efron,B., Carvalho,A.P., Wynhoven,B.,
Cane,P., Clarke,J., Sirivichayakul,S., Soares,M.A., Snoeck,J.,
Pillay,C., Rudich,H., Rodrigues,R., Holguin,A., Ariyoshi,K.,
Bouzas,M.B., Cahn,P., Sugiura,W., Soriano,V., Brigido,L.F.,
Grossman,Z., Morris,L., Vandamme,A.M., Tanuri,A., Phanuphak,P.,
Weber,J.N., Pillay,D., Harrigan,P.R., Camacho,R., Schapiro,J.M. and
Shafer,R.W.
TITLE Impact of HIV-1 Subtype and Antiretroviral Therapy on Protease and
Reverse Transcriptase Genotype: Results of a Global Collaboration
JOURNAL PLoS Med 2 (4), E112 (2005)
PUBMED 15839752
COMMENT Subtype assigned by HIV database staff [JM 5/07].
FEATURES Location/Qualifiers
source 1..702
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="TH212_RT"
/db_xref="taxon:11676"
/country="Thailand"
gene <1..>702
/gene="pol"
CDS <1..>702
/gene="pol"
/note="encodes reverse transcriptase and protease"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AAU01471.1"
/db_xref="GI:51342853"
/translation="TVALTEEKIKALTEICKELEEEGKISKIGPENPYNTPIFAIKKK
NSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDESF
RKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRIKNPEMVIYQ
YMDDLYVGSDLEIGQHRTKIEELRAHLWGWGFYTPDKKHQKEPPFLWMGYELHPDRWT
VQPIELPEKDSWTVND"
BASE COUNT 282 a 118 c 145 g 157 t
ORIGIN
1 acagtggcct tgacagaaga aaaaataaaa gcattaacag aaatttgtaa agagctggaa
61 gaggaaggaa aaatctcaaa aattgggcct gaaaatccat acaatactcc aatatttgct
121 ataaagaaaa agaacagcac caaatggagg aaattagtag atttcagaga gctcaataaa
181 agaactcaag atttttggga agttcaatta ggaataccac atccagcagg tttaaaaaag
241 aaaaaatcag taacagtact agatgtggga gatgcatatt tttcaattcc attagatgaa
301 agctttagaa agtatactgc attcaccata cctagtacaa acaatgagac accaggaatc
361 agatatcagt acaatgtgct gccacaaggg tggaaaggat caccggcaat attccagagt
421 agcatgacaa aaattttaga gccctttaga ataaaaaatc cagaaatggt tatctatcaa
481 tacatggatg acttgtatgt agggtctgat ctagaaatag ggcagcacag aacaaaaata
541 gaagagttaa gagctcatct atggggctgg ggattttata caccagacaa aaagcatcag
601 aaggaacctc cattcctatg gatgggatat gaactccatc ctgacagatg gacagtccag
661 cctatagaac tgccagaaaa agacagctgg actgtcaatg at
//
last modified: Tue May 31 10:56 2022