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LOCUS AY605571 711 bp RNA linear VRL 30-APR-2005
DEFINITION HIV-1 isolate TH158_RT from Thailand pol protein (pol) gene,
partial cds
ACCESSION AY605571
VERSION AY605571.1 GI:51342764
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 711)
Show all sequences for reference 1
AUTHORS Sirivichayakul,S. and Phanuphak,P.
TITLE RT and protease sequences from HIV-1 non-B infected persons from
Thailand
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 711)
Show all sequences for reference 2
AUTHORS Sirivichayakul,S. and Phanuphak,P.
TITLE Direct Submission
JOURNAL Submitted (23-APR-2004) Division of Allergy and Clinical
Immunology, Department of Medicine, Faculty of Medicine,
Chulalongkorn University, Rama IV Road, Bangkok 10330, Thailand
REFERENCE 3
Show all sequences for reference 3
AUTHORS Kantor,R., Katzenstein,D.A., Efron,B., Carvalho,A.P., Wynhoven,B.,
Cane,P., Clarke,J., Sirivichayakul,S., Soares,M.A., Snoeck,J.,
Pillay,C., Rudich,H., Rodrigues,R., Holguin,A., Ariyoshi,K.,
Bouzas,M.B., Cahn,P., Sugiura,W., Soriano,V., Brigido,L.F.,
Grossman,Z., Morris,L., Vandamme,A.M., Tanuri,A., Phanuphak,P.,
Weber,J.N., Pillay,D., Harrigan,P.R., Camacho,R., Schapiro,J.M. and
Shafer,R.W.
TITLE Impact of HIV-1 Subtype and Antiretroviral Therapy on Protease and
Reverse Transcriptase Genotype: Results of a Global Collaboration
JOURNAL PLoS Med 2 (4), E112 (2005)
PUBMED 15839752
COMMENT Subtype assigned by HIV database staff [JM 5/07].
FEATURES Location/Qualifiers
source 1..711
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="TH158_RT"
/db_xref="taxon:11676"
/country="Thailand"
gene <1..>711
/gene="pol"
CDS <1..>711
/gene="pol"
/note="encodes reverse transcriptase and protease"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AAU01427.1"
/db_xref="GI:51342765"
/translation="QVKQWPLTEEKIKALTEICKDMEEEGKISKIGPENPYNTPVFAI
KKKDSTKWRKLIDLRELNKRTQDFCEVQLGIPHPAGLKKKKSVTVLDVGDAFYSVPLD
ESFRKYTAFTIPSITNETPGIRYQYNVLPMGWKGSPAIFQSSMTKILEPFRIKNPEII
IYQYMDDLYVGSDLEIGQHRTKVEELRAHLLSWGFTTPDEKHQKEPPFLWMGYELHPD
RWTVQPIELPEKDSWTVND"
BASE COUNT 278 a 120 c 149 g 163 t 1 other
ORIGIN
1 caggttaaac agtggccatt gacagaagaa aaaataaaag cattaacaga aatttgtaaa
61 gatatggaag aggaaggaaa aatctcaaaa attgggcctg aaaatccata caatactcca
121 gtatttgcta taaagaaaaa ggacagcacc aaatggagga aattaataga tctcagagag
181 ctcaataaaa gaactcagga cttttgtgaa gttcaattag gaataccgca tccagcaggt
241 ttaaaaaaga aaaaatcagt aacagtactg gatgtgggag atgcatttta ttcagttcct
301 ttagatgaaa gctttagaaa gtatactgca ttcaccatac ctagtataac caatgagaca
361 ccaggaatca gatatcagta caatgtgctg ccaatggggt ggaaaggatc accggcaata
421 tttcaaagta gcatgacaaa aatcttagag ccctttagaa taaaaaatcc agaaataatt
481 atctatcaat ayatggatga cttgtatgta ggatctgatt tagaaatagg gcagcacaga
541 acaaaagtag aggagctaag agctcatctg ttgagctggg gatttactac accagacgaa
601 aagcatcaga aggaacctcc cttcctttgg atgggatatg aactccatcc tgacagatgg
661 acagtccagc ctatagaact gccagaaaaa gacagctgga ctgtcaatga t
//
last modified: Tue May 31 10:56 2022