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LOCUS AY605556 702 bp RNA linear VRL 30-APR-2005
DEFINITION HIV-1 isolate TH143_RT from Thailand pol protein (pol) gene,
partial cds
ACCESSION AY605556
VERSION AY605556.1 GI:51342734
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 702)
Show all sequences for reference 1
AUTHORS Sirivichayakul,S. and Phanuphak,P.
TITLE RT and protease sequences from HIV-1 non-B infected persons from
Thailand
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 702)
Show all sequences for reference 2
AUTHORS Sirivichayakul,S. and Phanuphak,P.
TITLE Direct Submission
JOURNAL Submitted (23-APR-2004) Division of Allergy and Clinical
Immunology, Department of Medicine, Faculty of Medicine,
Chulalongkorn University, Rama IV Road, Bangkok 10330, Thailand
REFERENCE 3
Show all sequences for reference 3
AUTHORS Kantor,R., Katzenstein,D.A., Efron,B., Carvalho,A.P., Wynhoven,B.,
Cane,P., Clarke,J., Sirivichayakul,S., Soares,M.A., Snoeck,J.,
Pillay,C., Rudich,H., Rodrigues,R., Holguin,A., Ariyoshi,K.,
Bouzas,M.B., Cahn,P., Sugiura,W., Soriano,V., Brigido,L.F.,
Grossman,Z., Morris,L., Vandamme,A.M., Tanuri,A., Phanuphak,P.,
Weber,J.N., Pillay,D., Harrigan,P.R., Camacho,R., Schapiro,J.M. and
Shafer,R.W.
TITLE Impact of HIV-1 Subtype and Antiretroviral Therapy on Protease and
Reverse Transcriptase Genotype: Results of a Global Collaboration
JOURNAL PLoS Med 2 (4), E112 (2005)
PUBMED 15839752
COMMENT Subtype assigned by HIV database staff [JM 5/07].
FEATURES Location/Qualifiers
source 1..702
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="TH143_RT"
/db_xref="taxon:11676"
/country="Thailand"
gene <1..>702
/gene="pol"
CDS <1..>702
/gene="pol"
/note="encodes reverse transcriptase and protease"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AAU01412.1"
/db_xref="GI:51342735"
/translation="PKVKQWPLTEEKIKALTEICKELEEEGKISKIGPENPYNTPIFA
IKKKNSAKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPL
DESFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRIKNPEI
VIYQYMDDLYVGSDLEIGQHRTKVEELRAHLWSWGFYTPDKKHQKEPPFLWMGYELHP
DKWTVQPVELPEEDSW"
BASE COUNT 280 a 116 c 147 g 159 t
ORIGIN
1 ccaaaagtta aacagtggcc attgacagaa gaaaaaataa aagcattaac agaaatttgt
61 aaagagttgg aagaggaagg aaaaatctca aaaattgggc ctgaaaatcc atacaatact
121 ccaatatttg ctataaagaa aaagaacagt gccaaatgga ggaaattagt agatttcaga
181 gagcttaata aaagaactca ggatttttgg gaggttcaat taggaatacc gcatccagca
241 ggtttaaaaa agaaaaaatc agtaacagta ctagatgtgg gagatgcata tttttcaatt
301 cctttagatg aaagctttag aaagtatact gcattcacca tacctagtac aaacaatgag
361 acaccaggaa tcagatatca atacaatgtg ctgccacagg gatggaaagg atcaccagca
421 atattccaga gtagcatgac aaaaatctta gagcccttta gaataaaaaa tccagaaata
481 gttatctatc aatacatgga tgacttgtat gtaggatctg atttagaaat agggcagcac
541 agaacaaaag tagaggagct aagagctcat ctatggagct gggggtttta tacaccagac
601 aaaaagcatc agaaggaacc tccattcctt tggatgggat atgaactcca tcctgacaaa
661 tggacagtcc agcctgtaga actgccagaa gaagacagct gg
//
last modified: Tue May 31 10:56 2022