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LOCUS	    AY556825		     620 bp    DNA     linear	VRL 07-SEP-2006
DEFINITION  HIV-1 isolate JCR27 from Uganda pol polyprotein (pol) gene, partial
	    cds
ACCESSION   AY556825
VERSION     AY556825.1 GI:45551351
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 620)
            Show all sequences for reference 1
  AUTHORS   Richard,N., Juntilla,M., Abraha,A., Demers,K., Paxinos,E.,
	    Galovich,J., Petropoulos,C., Whalen,C.C., Kyeyune,F., Atwine,D.,
	    Kityo,C., Mugyenyi,P. and Arts,E.J.
  TITLE     High prevalence of antiretroviral resistance in treated Ugandans
	    infected with non-subtype B human immunodeficiency virus type 1
  JOURNAL   AIDS Res. Hum. Retroviruses 20 (4), 355-364 (2004)
  PUBMED    15157354
REFERENCE   2 (bases 1 to 620)
            Show all sequences for reference 2
  AUTHORS   Richard,N., Juntilla,M., Abraha,A., Demers,K., Paxinos,E.,
	    Galovich,J., Petropoulos,C., Whalen,C.C., Kyeyune,F., Atwine,D.,
	    Kityo,C., Mugyenyi,P. and Arts,E.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-FEB-2004) Division of Infectious Diseases, Department
	    of Medicine, Case Western Reserve University, 2109 Adelbert Rd.,
	    Cleveland, OH 44106, USA
FEATURES             Location/Qualifiers
     source	     1..620
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="JCR27"
		     /isolation_source="male age 43; VL=561,000; CD4# PBMC"
		     /db_xref="taxon:11676"
		     /country="Uganda"
     gene	     <1..>620
		     /gene="pol"
     CDS	     <1..>620
		     /gene="pol"
		     /note="reverse transcriptase"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol polyprotein"
		     /protein_id="AAS67996.1"
		     /db_xref="GI:45551352"
		     /translation="PISPIETVPVKLKPGMDGPRVKQWPLTEEKIKALTEICTDMEKE
		     GKISKIGPENPYNTPIFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKK
		     KKSVTVLDVGDAYFSVPLDESFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIF
		     QSSMTRILEPFRIKNPEMIIYQYMDDLYVGSDLEIGQHRTKIEELRA"
BASE COUNT	256 a	 101 c	  128 g    135 t
ORIGIN
       1 ccaattagtc ctattgagac tgtaccagta aaattaaagc caggaatgga tggcccaagg 
      61 gttaaacaat ggccattgac agaagaaaaa ataaaagcat taacagaaat ttgtacagac 
     121 atggaaaagg aaggaaaaat ttcaaaaata gggcctgaaa atccatacaa tactccaata 
     181 tttgcaataa agaaaaaaga cagcactaaa tggaggaaat tagtagattt cagggagctc 
     241 aataaaagaa cacaagactt ttgggaagtt caattaggaa taccgcatcc agcgggccta 
     301 aaaaagaaga aatcagtaac agtactagat gtgggggacg catatttttc agttccttta 
     361 gatgaaagct ttagaaaata cactgcgttc accataccta gtataaacaa tgagacacca 
     421 ggaatcaggt accagtacaa tgtgctacca cagggatgga aagggtcacc agcaatattc 
     481 cagagtagca tgacaagaat cttagagccc tttagaataa aaaatccaga aatgattatc 
     541 taccaataca tggatgactt gtatgtagga tctgatttag aaatagggca gcatagaaca 
     601 aaaatagaag agttaagagc 
//
last modified: Tue May 31 10:56 2022


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