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LOCUS AY556825 620 bp DNA linear VRL 07-SEP-2006
DEFINITION HIV-1 isolate JCR27 from Uganda pol polyprotein (pol) gene, partial
cds
ACCESSION AY556825
VERSION AY556825.1 GI:45551351
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 620)
Show all sequences for reference 1
AUTHORS Richard,N., Juntilla,M., Abraha,A., Demers,K., Paxinos,E.,
Galovich,J., Petropoulos,C., Whalen,C.C., Kyeyune,F., Atwine,D.,
Kityo,C., Mugyenyi,P. and Arts,E.J.
TITLE High prevalence of antiretroviral resistance in treated Ugandans
infected with non-subtype B human immunodeficiency virus type 1
JOURNAL AIDS Res. Hum. Retroviruses 20 (4), 355-364 (2004)
PUBMED 15157354
REFERENCE 2 (bases 1 to 620)
Show all sequences for reference 2
AUTHORS Richard,N., Juntilla,M., Abraha,A., Demers,K., Paxinos,E.,
Galovich,J., Petropoulos,C., Whalen,C.C., Kyeyune,F., Atwine,D.,
Kityo,C., Mugyenyi,P. and Arts,E.J.
TITLE Direct Submission
JOURNAL Submitted (25-FEB-2004) Division of Infectious Diseases, Department
of Medicine, Case Western Reserve University, 2109 Adelbert Rd.,
Cleveland, OH 44106, USA
FEATURES Location/Qualifiers
source 1..620
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="JCR27"
/isolation_source="male age 43; VL=561,000; CD4# PBMC"
/db_xref="taxon:11676"
/country="Uganda"
gene <1..>620
/gene="pol"
CDS <1..>620
/gene="pol"
/note="reverse transcriptase"
/codon_start="1"
/transl_table="1"
/product="pol polyprotein"
/protein_id="AAS67996.1"
/db_xref="GI:45551352"
/translation="PISPIETVPVKLKPGMDGPRVKQWPLTEEKIKALTEICTDMEKE
GKISKIGPENPYNTPIFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKK
KKSVTVLDVGDAYFSVPLDESFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIF
QSSMTRILEPFRIKNPEMIIYQYMDDLYVGSDLEIGQHRTKIEELRA"
BASE COUNT 256 a 101 c 128 g 135 t
ORIGIN
1 ccaattagtc ctattgagac tgtaccagta aaattaaagc caggaatgga tggcccaagg
61 gttaaacaat ggccattgac agaagaaaaa ataaaagcat taacagaaat ttgtacagac
121 atggaaaagg aaggaaaaat ttcaaaaata gggcctgaaa atccatacaa tactccaata
181 tttgcaataa agaaaaaaga cagcactaaa tggaggaaat tagtagattt cagggagctc
241 aataaaagaa cacaagactt ttgggaagtt caattaggaa taccgcatcc agcgggccta
301 aaaaagaaga aatcagtaac agtactagat gtgggggacg catatttttc agttccttta
361 gatgaaagct ttagaaaata cactgcgttc accataccta gtataaacaa tgagacacca
421 ggaatcaggt accagtacaa tgtgctacca cagggatgga aagggtcacc agcaatattc
481 cagagtagca tgacaagaat cttagagccc tttagaataa aaaatccaga aatgattatc
541 taccaataca tggatgactt gtatgtagga tctgatttag aaatagggca gcatagaaca
601 aaaatagaag agttaagagc
//
last modified: Tue May 31 10:56 2022