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LOCUS AY489739 4793 bp RNA linear VRL 14-FEB-2005
DEFINITION HIV-1 isolate 99CM-DSC1320-O from Cameroon pol protein (pol) gene,
partial cds; vif protein (vif), vpr protein (vpr), tat protein
(tat), rev protein (rev), vpu protein (vpu), and env protein (env)
genes, complete cds; and nef protein (nef) gene, partial cds
ACCESSION AY489739
VERSION AY489739.1 GI:45644389
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 4793)
Show all sequences for reference 1
AUTHORS Yamaguchi,J., Bodelle,P., Vallari,A.S., Coffey,R., McArthur,C.P.,
Schochetman,G., Devare,S.G. and Brennan,C.A.
TITLE HIV infections in northwestern Cameroon: identification of HIV type
1 group O and dual HIV type 1 group M and group O infections
JOURNAL AIDS Res. Hum. Retroviruses 20 (9), 944-957 (2004)
PUBMED 15585082
REFERENCE 2 (bases 1 to 4793)
Show all sequences for reference 2
AUTHORS Yamaguchi,J., Bodelle,P., Vallari,A.S., Coffey,R., McArthur,C.P.,
Devare,S.G. and Brennan,C.A.
TITLE Direct Submission
JOURNAL Submitted (28-NOV-2003) Abbott Laboratories, 100 Abbott Park Rd.,
Abbott Park, IL 60064-6015, USA
FEATURES Location/Qualifiers
source 1..4793
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="99CM-DSC1320-O"
/db_xref="taxon:11676"
/country="Cameroon"
/note="serogroup: O"
gene <1..897
/gene="pol"
CDS <1..897
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AAS72944.1"
/db_xref="GI:45644390"
/translation="FLEGIDQAQEDHEKYHSNWRALASEFGLPPIVAKEIIANCPKCH
IKGEAXHGQVDCSPEVWQMDCTHTEGKVIIVAVHVASGFIEAEVIPAETGQETAYFLL
KLAARWPIKVLHTDNGPNFTSATMKAACWWANIKQEFGXPYNPQSQGVVEAMNKELKS
IIQQVRDQAEHLRTAVQMAVFIHNFKRKGGIGGYTAGERLIDILASQIQTTELQKQIL
KIQNFQVYYRDSRDPIWKGPAQLLWKGEGAVVIQDKGDIKVVPRRKAKIIRHYGKQMA
GADSMASGQTESESMEQPGEIP"
gene 812..1390
/gene="vif"
CDS 812..1390
/gene="vif"
/codon_start="1"
/transl_table="1"
/product="vif protein"
/protein_id="AAS72945.1"
/db_xref="GI:45644391"
/translation="MENRWQVLIVWQVDRQKVKAWNSLVKYHKYRSRKTKDWWYRHHF
ESRNPRVSSSVYIPVGPACIVVTTYWGLMPGEREEHLGHGVSIEWQYRKYRTQIDPET
ADRMIHLYYFTCFTESAIRRAILGQRVLTKCDYLEGHSKVGTLQLLALRAVVKTKRNK
PPLPSVQKLTEDRWNRHLRXKDQPESLSMNGH"
gene 1330..1632
/gene="vpr"
CDS 1330..1632
/gene="vpr"
/codon_start="1"
/transl_table="1"
/product="vpr protein"
/protein_id="AAS72946.1"
/db_xref="GI:45644392"
/translation="MEQAPEDQGPAREPFNEWALELLEELKAEAVRHFPXTWLNSLGQ
YIYETYGDTWLGVMAIIRILQQILFTHFRIGCQHSRIGIIPSNTRGRGRRNGSSRS"
gene 1613..4212
/gene="tat"
CDS join(1613..1821,4185..4212)
/gene="tat"
/codon_start="1"
/transl_table="1"
/product="tat protein"
/protein_id="AAS72947.1"
/db_xref="GI:45644393"
/translation="MDPVDPEVPPWHHPGSQPQTPCNNCYCKRCSYHCYVCFTKKGLG
ISYGRKKRRRAATASHPDNKDLVPEQSPAITNRK"
gene 1752..4423
/gene="rev"
CDS join(1752..1821,4185..4423)
/gene="rev"
/codon_start="1"
/transl_table="1"
/product="rev protein"
/protein_id="AAS72948.1"
/db_xref="GI:45644394"
/translation="MAGRSGDEQLLQAIRIIKILYQSNPQPSPIGSRSARRNRRRRWR
RRQAQVDTLAARILATIVHGPEDNNLVDLPPLEQLSIRDPESDQLSGNWTVDSRAEDN
"
gene 1835..2092
/gene="vpu"
CDS 1835..2092
/gene="vpu"
/codon_start="1"
/transl_table="1"
/product="vpu protein"
/protein_id="AAS72949.1"
/db_xref="GI:45644395"
/translation="MQHRDLLTLLIISALLIINVILWMFVLRKYLEHKKQDRREREIL
ERLRRIREIKDDSDYESNGEEEQEVMDLVHSHGFDNPMFEL"
gene 1998..4622
/gene="env"
CDS 1998..4622
/gene="env"
/codon_start="1"
/transl_table="1"
/product="env protein"
/protein_id="AAS72950.1"
/db_xref="GI:45644396"
/translation="MIVTMKVMEKKNRRSWILYIVMGLITPCLSSSQLYATVYAGVPV
WADAKPVLFCASDANLTSTEQHNVWAAQACVPTDPTPHEYPLKNVTDRFDIWKNYMVE
QMQEDIISLWEQSLKPCVQLTFMCVQMNCTDMDTNKNRAANTTAEVTMKKCDFNVTTV
VKDKKEKKQALFYVSDLIKLNETGNGTESMYTLINCNSTTVTQACPKVSFEPIPIHYC
APAGYAIFKCNSIEFNGTGTCNNISVVTCTHGIKPTISTQLILNGTLSKGKIRIMGKN
ISESGKNILVTLNSPVNITCERPYNLSVQQXNIGPMAWYSMGIREGNTSDSRRAFCNF
STTDWEKTLKQTTERYLELVNNTGNVNMIFTHNTGGDSEVAYLHFNCHGEFFYCNTSG
MFNYTFNCTGTNCSVSQNSTKDNSTIIPCKIKQVVRSWMKGGSGLYAPPIRGQLTCMS
NITGMILQMDRPWNNNNSNATFRPEGGNMEDIWRTQLFNYKVVRVKPFSVAPTKIARP
VIGTGTHREKRAVGLGMLFLGVLSAAGSTMGAAATALTVQTHTLMKGIVQQQDNLLRA
IQAQHQLLKLSVWGIRQLRARLLALETFIQNQQLLNLWGCKGNLICYTSVKWNDTWKG
NSDTSLENIWDNMTWQEWDQQISNISSTIFEEIQKAQVQQEQNEKKLLELSEWASIWS
WFDITKWLWYIKIAIIIVGALVGVRIVMIVLNLVRNIRQGYQPLSLQIPSHHQSEVGA
PGGTGEGGGEGGRPRWIPLQQGFLQLLYTDLRTIILWIYHLLSNLASGIQRVTSYLGI
GLWTLGQKIIDACKLCKAVIQYWLQELQKSATSLLDTVAVAVANWTDNIILGVQRIGR
GILNVPRRIRQGFERTLL"
gene 4624..>4793
/gene="nef"
CDS 4624..>4793
/gene="nef"
/codon_start="1"
/transl_table="1"
/product="nef protein"
/protein_id="AAS72951.1"
/db_xref="GI:45644397"
/translation="MGNVLGKSKFAGWSAIRDRMRRAPAPAPEPEPCAPGVGELSRAV
AASGGIPSSITP"
BASE COUNT 1718 a 847 c 1111 g 1110 t 7 other
ORIGIN
1 ttcctagagg ggatagacca ggcacaggaa gatcatgaaa aatatcatag caattggaga
61 gcattagcca gtgagtttgg actmccacca atagtggcca aagaaattat tgctaattgt
121 cctaaatgtc atataaaagg ggaagcaatk catggtcaag tagactgcag tccagaagta
181 tggcaaatgg attgcacaca tacagaaggc aaagtcataa tagttgctgt ccatgtggca
241 agtgggttca tagaagcaga agtaatacca gcagaaacag gacaagaaac tgcctatttc
301 ctgttaaagt tagcagcaag atggcctatt aaagtactac atacagacaa tgggcctaat
361 tttacaagtg caaccatgaa ggctgcatgt tggtgggcca acataaaaca ggagtttgga
421 rtaccatata acccacaaag tcaaggagta gtagaggcca tgaacaagga attaaagtca
481 atcatacaac aagtgaggga ccaagcagag cacttaagaa cagcagtaca aatggcagta
541 tttattcaca attttaaaag aaaagggggg attggggggt acactgcagg agaaagatta
601 atagacatat tagcatcaca aatacaaaca acagaactac aaaaacaaat tttaaaaatt
661 caaaattttc aggtctatta cagagacagc agagacccta tttggaaagg accggcacag
721 ctcctgtgga aaggtgaggg agcagtagtc atacaagata aaggagatat taaggtagta
781 ccaagaagaa aggcaaaaat aatcaggcat tatggaaaac agatggcagg tgctgatagt
841 atggcaagtg gacagacaga aagtgaaagc atggaacagc ctggtgaaat accataaata
901 caggtctagg aagaccaaag actggtggta cagacatcat tttgaatcta gaaatccaag
961 agttagttca agtgtatata ttccagtagg gccagcttgt atagtagtga ccacatattg
1021 gggactgatg ccaggggaaa gagaggaaca tttaggacat ggagttagta tagaatggca
1081 gtacaggaag tatagaacac agattgaccc tgaaacagca gacaggatga tacatctgta
1141 ttatttcacc tgttttacag agtcagcaat caggagagcc atcttagggc agagagtact
1201 gaccaagtgt gattaccttg aaggacatag taaggtaggg acactgcaac tactagcttt
1261 aagagcagtt gtaaaaacaa aaagaaataa gcctccctta cccagtgtcc agaagttaac
1321 agaagataga tggaacaggc acctgaggay caaggaccag ccagagagcc tttcaatgaa
1381 tgggcactag agctcctaga agagctgaaa gcagaagcag taagacattt ccctrgract
1441 tggctgaact ctttgggaca atacatctat gagacttatg gagacacttg gttaggagtt
1501 atggcaatta taagaatctt acaacaaata ctatttaccc attttagaat tggatgtcaa
1561 catagtagaa taggaattat cccatctaac acaagaggaa gaggaagaag aaatggatcc
1621 agtagatcct gaggtgcccc cttggcatca ccctggaagt caaccccaaa ccccttgtaa
1681 taattgctat tgcaaaagat gcagctatca ttgctatgtt tgtttcacaa agaagggttt
1741 gggaatctcc tatggcagga agaagcggcg acgagcagct actgcaagcc atccggataa
1801 taaagatctt gtaccagagc agtaagtaac gctaatgcag catagggacc tgttaacatt
1861 actaattatt agtgctttgc ttattataaa tgtaatttta tggatgtttg ttcttagaaa
1921 atatttagaa cacaagaaac aagacagaag ggagagagag atacttgaaa ggttaagaag
1981 gataagagaa attaaggatg atagtgacta tgaaagtaat ggagaagaag aacaggaggt
2041 catggatctt gtacatagtc atgggtttga taaccccatg tttgagctct agccagttgt
2101 atgcaacagt ctatgctgga gtgcctgtat gggcagatgc aaaaccagta ttattctgtg
2161 cttcagacgc taacctaaca agcactgagc aacataatgt ttgggcagca caagcctgtg
2221 ttcccacaga ccccactcca catgaatatc cattaaaaaa tgtgacagat agatttgata
2281 tatggaaaaa ctacatggtg gaacagatgc aggaagacat tattagttta tgggaacaaa
2341 gtttaaaacc ttgtgtgcaa ttgactttca tgtgtgtaca aatgaactgt acagacatgg
2401 acacaaacaa gaacagagca gcaaatacaa cagcagaagt taccatgaaa aagtgtgatt
2461 ttaatgtaac cacagtggtc aaagacaaaa aggagaaaaa acaggctcta ttttatgtat
2521 cagatttgat caagcttaat gagacgggaa atgggacgga aagcatgtat acattaatta
2581 attgtaactc tactacagtc acgcaagcct gtccaaaggt atcttttgag cccattccaa
2641 tacattattg tgctccagca ggatatgcta tctttaagtg taacagtata gaatttaatg
2701 gaacaggcac atgcaacaac atttcagtag ttacttgtac acatggtatc aagccaacaa
2761 taagtactca actaatacta aatgggacac tctctaaagg aaaaataaga attatgggaa
2821 aaaatatttc agaaagtggg aaaaatattc tagtgactct aaattctcct gtaaacataa
2881 cctgtgagag accatacaat ctgtcagtac aacagatraa cataggccca atggcctggt
2941 acagcatggg cataagggaa ggcaacacaa gcgactcaag gagagctttt tgcaatttta
3001 gtaccactga ctgggaaaaa accttaaaac aaacaactga aaggtattta gaacttgtga
3061 acaatacagg aaatgttaac atgatattca ctcacaacac tggtggagat tcagaggtag
3121 cctatttgca ttttaactgt catggagagt tcttttattg taacacatct gggatgttta
3181 attatacctt taattgtaca ggaaccaact gcagtgttag ccaaaatagc actaaggaca
3241 atagtaccat aataccttgc aagataaaac aggtggtaag gtcatggatg aagggagggt
3301 caggactcta tgcccctccc atcagaggtc aactgacatg tatgtcaaat ataactggaa
3361 tgattctaca aatggatagg ccatggaaca ataataacag taatgctaca tttagaccag
3421 aagggggaaa catggaagat atatggagaa ctcaattgtt caactataaa gtagtaaggg
3481 taaaaccttt tagtgtagca cctacaaaaa ttgcaaggcc agtaataggc actggcactc
3541 atagagaaaa gagagcagta gggttgggaa tgctattctt aggggttcta agtgcagcag
3601 gtagcactat gggcgcagcg gcaacagcgc tgacggtaca gacccacact ttgatgaagg
3661 gtatagtgca acagcaggac aacctgctaa gagcaataca ggctcagcat caactgctga
3721 agctatctgt atggggtatc agacaactcc gagctcgcct gctagcctta gaaaccttta
3781 tacagaatca gcaactccta aacctatggg gatgtaaagg aaacctaatc tgctacacat
3841 cagtaaaatg gaacgataca tggaaaggaa atagtgatac tagtttagaa aacatttggg
3901 acaacatgac atggcaagaa tgggatcaac agataagcaa cataagctcc accatatttg
3961 aggaaataca aaaggcacaa gtacagcagg aacagaatga gaaaaagtta ctagagttaa
4021 gtgaatgggc ttctatttgg agttggtttg acataactaa atggctgtgg tatataaaaa
4081 tagctataat catagtagga gcactagtag gtgtgagaat tgtcatgata gtgcttaacc
4141 tagtgagaaa cattaggcag ggatatcaac ccctctcatt gcagatcccc agccatcacc
4201 aatcggaagt aggagcgcca ggaggaacag gagaaggagg tggagaaggc ggcaggccca
4261 ggtggatacc cttgcagcaa ggattcttgc aactattgta cacggacctg aggacaataa
4321 tcttgtggat ctaccacctc ttgagcaact tagcatcagg gatccagaga gtgaccagct
4381 atctgggaat tggactgtgg actctagggc agaagataat tgatgcttgc aaactttgta
4441 aagctgtaat acaatactgg ctacaagaat tgcagaaaag tgctacaagt ctactagata
4501 ccgttgcagt ggcagttgct aattggactg acaacataat cttaggagta caaagaatag
4561 gaaggggaat tcttaacgtc ccaagaagaa ttagacaggg ctttgaacga accttattgt
4621 aacatgggaa acgtattggg aaaaagtaag tttgcaggat ggtcagcaat aagagacaga
4681 atgagaagag ctcctgctcc tgctcccgag cctgaaccat gtgcacctgg agtaggagaa
4741 ctctccaggg cagtagcagc tagcggaggg ataccaagtt ccattactcc tca
//
last modified: Tue May 31 10:56 2022