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LOCUS	    AY489739		    4793 bp    RNA     linear	VRL 14-FEB-2005
DEFINITION  HIV-1 isolate 99CM-DSC1320-O from Cameroon pol protein (pol) gene,
	    partial cds; vif protein (vif), vpr protein (vpr), tat protein
	    (tat), rev protein (rev), vpu protein (vpu), and env protein (env)
	    genes, complete cds; and nef protein (nef) gene, partial cds
ACCESSION   AY489739
VERSION     AY489739.1 GI:45644389
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 4793)
            Show all sequences for reference 1
  AUTHORS   Yamaguchi,J., Bodelle,P., Vallari,A.S., Coffey,R., McArthur,C.P.,
	    Schochetman,G., Devare,S.G. and Brennan,C.A.
  TITLE     HIV infections in northwestern Cameroon: identification of HIV type
	    1 group O and dual HIV type 1 group M and group O infections
  JOURNAL   AIDS Res. Hum. Retroviruses 20 (9), 944-957 (2004)
  PUBMED    15585082
REFERENCE   2 (bases 1 to 4793)
            Show all sequences for reference 2
  AUTHORS   Yamaguchi,J., Bodelle,P., Vallari,A.S., Coffey,R., McArthur,C.P.,
	    Devare,S.G. and Brennan,C.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-NOV-2003) Abbott Laboratories, 100 Abbott Park Rd.,
	    Abbott Park, IL 60064-6015, USA
FEATURES             Location/Qualifiers
     source	     1..4793
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="99CM-DSC1320-O"
		     /db_xref="taxon:11676"
		     /country="Cameroon"
		     /note="serogroup: O"
     gene	     <1..897
		     /gene="pol"
     CDS	     <1..897
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AAS72944.1"
		     /db_xref="GI:45644390"
		     /translation="FLEGIDQAQEDHEKYHSNWRALASEFGLPPIVAKEIIANCPKCH
		     IKGEAXHGQVDCSPEVWQMDCTHTEGKVIIVAVHVASGFIEAEVIPAETGQETAYFLL
		     KLAARWPIKVLHTDNGPNFTSATMKAACWWANIKQEFGXPYNPQSQGVVEAMNKELKS
		     IIQQVRDQAEHLRTAVQMAVFIHNFKRKGGIGGYTAGERLIDILASQIQTTELQKQIL
		     KIQNFQVYYRDSRDPIWKGPAQLLWKGEGAVVIQDKGDIKVVPRRKAKIIRHYGKQMA
		     GADSMASGQTESESMEQPGEIP"
     gene	     812..1390
		     /gene="vif"
     CDS	     812..1390
		     /gene="vif"
		     /codon_start="1"
		     /transl_table="1"
		     /product="vif protein"
		     /protein_id="AAS72945.1"
		     /db_xref="GI:45644391"
		     /translation="MENRWQVLIVWQVDRQKVKAWNSLVKYHKYRSRKTKDWWYRHHF
		     ESRNPRVSSSVYIPVGPACIVVTTYWGLMPGEREEHLGHGVSIEWQYRKYRTQIDPET
		     ADRMIHLYYFTCFTESAIRRAILGQRVLTKCDYLEGHSKVGTLQLLALRAVVKTKRNK
		     PPLPSVQKLTEDRWNRHLRXKDQPESLSMNGH"
     gene	     1330..1632
		     /gene="vpr"
     CDS	     1330..1632
		     /gene="vpr"
		     /codon_start="1"
		     /transl_table="1"
		     /product="vpr protein"
		     /protein_id="AAS72946.1"
		     /db_xref="GI:45644392"
		     /translation="MEQAPEDQGPAREPFNEWALELLEELKAEAVRHFPXTWLNSLGQ
		     YIYETYGDTWLGVMAIIRILQQILFTHFRIGCQHSRIGIIPSNTRGRGRRNGSSRS"
     gene	     1613..4212
		     /gene="tat"
     CDS	     join(1613..1821,4185..4212)
		     /gene="tat"
		     /codon_start="1"
		     /transl_table="1"
		     /product="tat protein"
		     /protein_id="AAS72947.1"
		     /db_xref="GI:45644393"
		     /translation="MDPVDPEVPPWHHPGSQPQTPCNNCYCKRCSYHCYVCFTKKGLG
		     ISYGRKKRRRAATASHPDNKDLVPEQSPAITNRK"
     gene	     1752..4423
		     /gene="rev"
     CDS	     join(1752..1821,4185..4423)
		     /gene="rev"
		     /codon_start="1"
		     /transl_table="1"
		     /product="rev protein"
		     /protein_id="AAS72948.1"
		     /db_xref="GI:45644394"
		     /translation="MAGRSGDEQLLQAIRIIKILYQSNPQPSPIGSRSARRNRRRRWR
		     RRQAQVDTLAARILATIVHGPEDNNLVDLPPLEQLSIRDPESDQLSGNWTVDSRAEDN
		     "
     gene	     1835..2092
		     /gene="vpu"
     CDS	     1835..2092
		     /gene="vpu"
		     /codon_start="1"
		     /transl_table="1"
		     /product="vpu protein"
		     /protein_id="AAS72949.1"
		     /db_xref="GI:45644395"
		     /translation="MQHRDLLTLLIISALLIINVILWMFVLRKYLEHKKQDRREREIL
		     ERLRRIREIKDDSDYESNGEEEQEVMDLVHSHGFDNPMFEL"
     gene	     1998..4622
		     /gene="env"
     CDS	     1998..4622
		     /gene="env"
		     /codon_start="1"
		     /transl_table="1"
		     /product="env protein"
		     /protein_id="AAS72950.1"
		     /db_xref="GI:45644396"
		     /translation="MIVTMKVMEKKNRRSWILYIVMGLITPCLSSSQLYATVYAGVPV
		     WADAKPVLFCASDANLTSTEQHNVWAAQACVPTDPTPHEYPLKNVTDRFDIWKNYMVE
		     QMQEDIISLWEQSLKPCVQLTFMCVQMNCTDMDTNKNRAANTTAEVTMKKCDFNVTTV
		     VKDKKEKKQALFYVSDLIKLNETGNGTESMYTLINCNSTTVTQACPKVSFEPIPIHYC
		     APAGYAIFKCNSIEFNGTGTCNNISVVTCTHGIKPTISTQLILNGTLSKGKIRIMGKN
		     ISESGKNILVTLNSPVNITCERPYNLSVQQXNIGPMAWYSMGIREGNTSDSRRAFCNF
		     STTDWEKTLKQTTERYLELVNNTGNVNMIFTHNTGGDSEVAYLHFNCHGEFFYCNTSG
		     MFNYTFNCTGTNCSVSQNSTKDNSTIIPCKIKQVVRSWMKGGSGLYAPPIRGQLTCMS
		     NITGMILQMDRPWNNNNSNATFRPEGGNMEDIWRTQLFNYKVVRVKPFSVAPTKIARP
		     VIGTGTHREKRAVGLGMLFLGVLSAAGSTMGAAATALTVQTHTLMKGIVQQQDNLLRA
		     IQAQHQLLKLSVWGIRQLRARLLALETFIQNQQLLNLWGCKGNLICYTSVKWNDTWKG
		     NSDTSLENIWDNMTWQEWDQQISNISSTIFEEIQKAQVQQEQNEKKLLELSEWASIWS
		     WFDITKWLWYIKIAIIIVGALVGVRIVMIVLNLVRNIRQGYQPLSLQIPSHHQSEVGA
		     PGGTGEGGGEGGRPRWIPLQQGFLQLLYTDLRTIILWIYHLLSNLASGIQRVTSYLGI
		     GLWTLGQKIIDACKLCKAVIQYWLQELQKSATSLLDTVAVAVANWTDNIILGVQRIGR
		     GILNVPRRIRQGFERTLL"
     gene	     4624..>4793
		     /gene="nef"
     CDS	     4624..>4793
		     /gene="nef"
		     /codon_start="1"
		     /transl_table="1"
		     /product="nef protein"
		     /protein_id="AAS72951.1"
		     /db_xref="GI:45644397"
		     /translation="MGNVLGKSKFAGWSAIRDRMRRAPAPAPEPEPCAPGVGELSRAV
		     AASGGIPSSITP"
BASE COUNT     1718 a	 847 c	 1111 g   1110 t      7 other
ORIGIN
       1 ttcctagagg ggatagacca ggcacaggaa gatcatgaaa aatatcatag caattggaga 
      61 gcattagcca gtgagtttgg actmccacca atagtggcca aagaaattat tgctaattgt 
     121 cctaaatgtc atataaaagg ggaagcaatk catggtcaag tagactgcag tccagaagta 
     181 tggcaaatgg attgcacaca tacagaaggc aaagtcataa tagttgctgt ccatgtggca 
     241 agtgggttca tagaagcaga agtaatacca gcagaaacag gacaagaaac tgcctatttc 
     301 ctgttaaagt tagcagcaag atggcctatt aaagtactac atacagacaa tgggcctaat 
     361 tttacaagtg caaccatgaa ggctgcatgt tggtgggcca acataaaaca ggagtttgga 
     421 rtaccatata acccacaaag tcaaggagta gtagaggcca tgaacaagga attaaagtca 
     481 atcatacaac aagtgaggga ccaagcagag cacttaagaa cagcagtaca aatggcagta 
     541 tttattcaca attttaaaag aaaagggggg attggggggt acactgcagg agaaagatta 
     601 atagacatat tagcatcaca aatacaaaca acagaactac aaaaacaaat tttaaaaatt 
     661 caaaattttc aggtctatta cagagacagc agagacccta tttggaaagg accggcacag 
     721 ctcctgtgga aaggtgaggg agcagtagtc atacaagata aaggagatat taaggtagta 
     781 ccaagaagaa aggcaaaaat aatcaggcat tatggaaaac agatggcagg tgctgatagt 
     841 atggcaagtg gacagacaga aagtgaaagc atggaacagc ctggtgaaat accataaata 
     901 caggtctagg aagaccaaag actggtggta cagacatcat tttgaatcta gaaatccaag 
     961 agttagttca agtgtatata ttccagtagg gccagcttgt atagtagtga ccacatattg 
    1021 gggactgatg ccaggggaaa gagaggaaca tttaggacat ggagttagta tagaatggca 
    1081 gtacaggaag tatagaacac agattgaccc tgaaacagca gacaggatga tacatctgta 
    1141 ttatttcacc tgttttacag agtcagcaat caggagagcc atcttagggc agagagtact 
    1201 gaccaagtgt gattaccttg aaggacatag taaggtaggg acactgcaac tactagcttt 
    1261 aagagcagtt gtaaaaacaa aaagaaataa gcctccctta cccagtgtcc agaagttaac 
    1321 agaagataga tggaacaggc acctgaggay caaggaccag ccagagagcc tttcaatgaa 
    1381 tgggcactag agctcctaga agagctgaaa gcagaagcag taagacattt ccctrgract 
    1441 tggctgaact ctttgggaca atacatctat gagacttatg gagacacttg gttaggagtt 
    1501 atggcaatta taagaatctt acaacaaata ctatttaccc attttagaat tggatgtcaa 
    1561 catagtagaa taggaattat cccatctaac acaagaggaa gaggaagaag aaatggatcc 
    1621 agtagatcct gaggtgcccc cttggcatca ccctggaagt caaccccaaa ccccttgtaa 
    1681 taattgctat tgcaaaagat gcagctatca ttgctatgtt tgtttcacaa agaagggttt 
    1741 gggaatctcc tatggcagga agaagcggcg acgagcagct actgcaagcc atccggataa 
    1801 taaagatctt gtaccagagc agtaagtaac gctaatgcag catagggacc tgttaacatt 
    1861 actaattatt agtgctttgc ttattataaa tgtaatttta tggatgtttg ttcttagaaa 
    1921 atatttagaa cacaagaaac aagacagaag ggagagagag atacttgaaa ggttaagaag 
    1981 gataagagaa attaaggatg atagtgacta tgaaagtaat ggagaagaag aacaggaggt 
    2041 catggatctt gtacatagtc atgggtttga taaccccatg tttgagctct agccagttgt 
    2101 atgcaacagt ctatgctgga gtgcctgtat gggcagatgc aaaaccagta ttattctgtg 
    2161 cttcagacgc taacctaaca agcactgagc aacataatgt ttgggcagca caagcctgtg 
    2221 ttcccacaga ccccactcca catgaatatc cattaaaaaa tgtgacagat agatttgata 
    2281 tatggaaaaa ctacatggtg gaacagatgc aggaagacat tattagttta tgggaacaaa 
    2341 gtttaaaacc ttgtgtgcaa ttgactttca tgtgtgtaca aatgaactgt acagacatgg 
    2401 acacaaacaa gaacagagca gcaaatacaa cagcagaagt taccatgaaa aagtgtgatt 
    2461 ttaatgtaac cacagtggtc aaagacaaaa aggagaaaaa acaggctcta ttttatgtat 
    2521 cagatttgat caagcttaat gagacgggaa atgggacgga aagcatgtat acattaatta 
    2581 attgtaactc tactacagtc acgcaagcct gtccaaaggt atcttttgag cccattccaa 
    2641 tacattattg tgctccagca ggatatgcta tctttaagtg taacagtata gaatttaatg 
    2701 gaacaggcac atgcaacaac atttcagtag ttacttgtac acatggtatc aagccaacaa 
    2761 taagtactca actaatacta aatgggacac tctctaaagg aaaaataaga attatgggaa 
    2821 aaaatatttc agaaagtggg aaaaatattc tagtgactct aaattctcct gtaaacataa 
    2881 cctgtgagag accatacaat ctgtcagtac aacagatraa cataggccca atggcctggt 
    2941 acagcatggg cataagggaa ggcaacacaa gcgactcaag gagagctttt tgcaatttta 
    3001 gtaccactga ctgggaaaaa accttaaaac aaacaactga aaggtattta gaacttgtga 
    3061 acaatacagg aaatgttaac atgatattca ctcacaacac tggtggagat tcagaggtag 
    3121 cctatttgca ttttaactgt catggagagt tcttttattg taacacatct gggatgttta 
    3181 attatacctt taattgtaca ggaaccaact gcagtgttag ccaaaatagc actaaggaca 
    3241 atagtaccat aataccttgc aagataaaac aggtggtaag gtcatggatg aagggagggt 
    3301 caggactcta tgcccctccc atcagaggtc aactgacatg tatgtcaaat ataactggaa 
    3361 tgattctaca aatggatagg ccatggaaca ataataacag taatgctaca tttagaccag 
    3421 aagggggaaa catggaagat atatggagaa ctcaattgtt caactataaa gtagtaaggg 
    3481 taaaaccttt tagtgtagca cctacaaaaa ttgcaaggcc agtaataggc actggcactc 
    3541 atagagaaaa gagagcagta gggttgggaa tgctattctt aggggttcta agtgcagcag 
    3601 gtagcactat gggcgcagcg gcaacagcgc tgacggtaca gacccacact ttgatgaagg 
    3661 gtatagtgca acagcaggac aacctgctaa gagcaataca ggctcagcat caactgctga 
    3721 agctatctgt atggggtatc agacaactcc gagctcgcct gctagcctta gaaaccttta 
    3781 tacagaatca gcaactccta aacctatggg gatgtaaagg aaacctaatc tgctacacat 
    3841 cagtaaaatg gaacgataca tggaaaggaa atagtgatac tagtttagaa aacatttggg 
    3901 acaacatgac atggcaagaa tgggatcaac agataagcaa cataagctcc accatatttg 
    3961 aggaaataca aaaggcacaa gtacagcagg aacagaatga gaaaaagtta ctagagttaa 
    4021 gtgaatgggc ttctatttgg agttggtttg acataactaa atggctgtgg tatataaaaa 
    4081 tagctataat catagtagga gcactagtag gtgtgagaat tgtcatgata gtgcttaacc 
    4141 tagtgagaaa cattaggcag ggatatcaac ccctctcatt gcagatcccc agccatcacc 
    4201 aatcggaagt aggagcgcca ggaggaacag gagaaggagg tggagaaggc ggcaggccca 
    4261 ggtggatacc cttgcagcaa ggattcttgc aactattgta cacggacctg aggacaataa 
    4321 tcttgtggat ctaccacctc ttgagcaact tagcatcagg gatccagaga gtgaccagct 
    4381 atctgggaat tggactgtgg actctagggc agaagataat tgatgcttgc aaactttgta 
    4441 aagctgtaat acaatactgg ctacaagaat tgcagaaaag tgctacaagt ctactagata 
    4501 ccgttgcagt ggcagttgct aattggactg acaacataat cttaggagta caaagaatag 
    4561 gaaggggaat tcttaacgtc ccaagaagaa ttagacaggg ctttgaacga accttattgt 
    4621 aacatgggaa acgtattggg aaaaagtaag tttgcaggat ggtcagcaat aagagacaga 
    4681 atgagaagag ctcctgctcc tgctcccgag cctgaaccat gtgcacctgg agtaggagaa 
    4741 ctctccaggg cagtagcagc tagcggaggg ataccaagtt ccattactcc tca
//
last modified: Tue May 31 10:56 2022


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