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LOCUS	    AY471966		     943 bp    RNA     linear	VRL 07-JUN-2004
DEFINITION  HIV-1 isolate 216120 from USA pol protein (pol) gene, partial cds
ACCESSION   AY471966
VERSION     AY471966.1 GI:44887334
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 943)
            Show all sequences for reference 1
  AUTHORS   Weinstock,H.S., Zaidi,I., Heneine,W., Bennett,D.,
	    Garcia-Lerma,J.G., Douglas,J.M. Jr.., LaLota,M., Dickinson,G.,
	    Schwarcz,S., Torian,L., Wendell,D., Paul,S., Goza,G.A., Ruiz,J.,
	    Boyett,B. and Kaplan,J.E.
  TITLE     The Epidemiology of Antiretroviral Drug Resistance among Drug-Naive
	    HIV-1-Infected Persons in 10 US Cities
  JOURNAL   J. Infect. Dis. 189 (12), 2174-2180 (2004)
  PUBMED    15181563
REFERENCE   2 (bases 1 to 943)
            Show all sequences for reference 2
  AUTHORS   Weinstock,H., Zaidi,I., Heneine,W., Bennett,D., Garcia-Lerma,G. and
	    Kaplan,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-NOV-2003) Division of HIV/AIDS Prevention,
	    Surveillance and Epidemiology, Centers for Disease Control and
	    Prevention, 1600 Clifton Road, MS E02, Atlanta, GA 30333, USA
FEATURES             Location/Qualifiers
     source	     1..943
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="216120"
		     /db_xref="taxon:11676"
		     /country="USA"
     gene	     <1..>943
		     /gene="pol"
     CDS	     <1..>943
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AAS47995.1"
		     /db_xref="GI:44887335"
		     /translation="VVEEMSLPGKWKPKMIGGIGGFIKVKQYEQILVEICGHKAIGTV
		     LVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKAL
		     VEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQL
		     GIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSINNETPGIRYQYNVLP
		     QGWKGSPAIFQSSMTKILDPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQH
		     LLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVL"
BASE COUNT	369 a	 148 c	  195 g    231 t
ORIGIN
       1 gtagtagaag aaatgagttt gccaggaaaa tggaaaccaa aaatgatagg gggaattgga 
      61 ggttttatca aagtaaaaca gtatgagcag atactcgtag aaatttgtgg gcataaagct 
     121 ataggtacag tattagtagg acctacacct gtcaacataa tcggaagaaa tctgttgact 
     181 cagattggtt gcactttaaa ttttcccatt agtcctattg aaactgtacc agtaaaatta 
     241 aagccaggaa tggatggccc aaaagttaaa caatggccgt tgacagaaga aaaaataaaa 
     301 gcattagtag aaatttgtac agaaatggaa aaggaaggga aaatttcaaa aattgggcct 
     361 gaaaatccat acaatactcc agtatttgcc ataaagaaaa aggatagtac taaatggaga 
     421 aaattagtag atttcagaga acttaataag agaacccaag acttctggga agttcaatta 
     481 ggaataccac atcccgcagg gttaaaaaag aaaaaatcag taacagtgct ggatgtgggt 
     541 gatgcatatt tttcagttcc cttagataaa gactttagga agtatactgc atttaccata 
     601 cctagtataa acaatgagac accagggatt agatatcagt acaatgtgct tccacaggga 
     661 tggaaaggat caccagcaat attccaaagt agcatgacaa aaatcttaga tccttttaga 
     721 aaacaaaatc cagacatagt tatctatcaa tacatggatg atttgtatgt aggatctgac 
     781 ttagaaatag gacagcatag aacaaaaata gaggaactga gacaacatct gttgaagtgg 
     841 ggatttacca caccagataa aaaacatcag aaagaacctc cattcctttg gatgggctat 
     901 gaactccatc ctgataaatg gacagtacag cctatagtgc tgc
//
last modified: Tue May 31 10:56 2022


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